PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g037310.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRF
Protein Properties Length: 420aa    MW: 46631.2 Da    PI: 9.3127
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g037310.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC67.41.9e-21121164145
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       d+epgrCrRtDGKkWRC+r+v++g+k+C  H+hrg  rsrk++e+
  Sopen01g037310.1 121 DPEPGRCRRTDGKKWRCKRDVIPGQKYCGQHVHRG-RRSRKPVEA 164
                       79*********************************.688998886 PP
2WRC58.89.2e-19311349240
               WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 
                       a++ rCrR+DGKkWRCs++v++ +k+CE H+hrg +r+r
  Sopen01g037310.1 311 ADQQRCRRSDGKKWRCSKTVVPCQKYCETHMHRGANRKR 349
                       7899********************************997 PP
3QLQ47.65.1e-175793137
               QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                      s FT aQ+q+L  Q+ ++KyL++++PvP +L ++i++
  Sopen01g037310.1 57 SVFTEAQFQELQLQAVIFKYLVSGLPVPFHLFFIIWN 93
                      67*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.7E-75793IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.4685893IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.9E-125992IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.67121165IPR014977WRC domain
PfamPF088798.2E-18122161IPR014977WRC domain
PROSITE profilePS5166720.629310354IPR014977WRC domain
PfamPF088795.8E-16312349IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MQLHLFSATP LSLSGKGKED EIKKKKGSPP CIELSLGYGS SSHVVEEDEK DDRSSNSVFT  60
EAQFQELQLQ AVIFKYLVSG LPVPFHLFFI IWNSVSSSLG DGGIYKLYPT LGRFDYTSMT  120
DPEPGRCRRT DGKKWRCKRD VIPGQKYCGQ HVHRGRRSRK PVEASEHVMR SDDTNIISKI  180
TKLYASSDDP GSKCAPASSK TSCLSSTSRT NQYNSIEDSS AKPRFINSGY GSEKQDTYMI  240
CKRKDITTSV KTPSFIAGDN ADSKNIDFNR ISPSKTNQKQ NCGEATKHGA LVPILGLSTK  300
SDQQHTIGSE ADQQRCRRSD GKKWRCSKTV VPCQKYCETH MHRGANRKRV ASVSVVVPPS  360
KSPSYRFCPP ENDGTRRNLN TSLSIYTIPG RQNITDDDSN SNSISDATTI TDEIPAFVSH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069480.10.0growth-regulating factor 9
TrEMBLM1AYU10.0M1AYU1_SOLTU; Uncharacterized protein
STRINGSolyc01g091540.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77981922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.11e-27growth-regulating factor 3