PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g037580.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 873aa    MW: 97017.6 Da    PI: 6.4414
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g037580.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like44.43.6e-141772072555
           G2-like  25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       ++A+Pk+i+e+m+ +gLt+ehv+SHLQkYR+
  Sopen01g037580.1 177 KEAVPKKIVEIMNEPGLTREHVASHLQKYRM 207
                       68****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.57E-71498IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.0E-1014155No hitNo description
SuperFamilySSF466891.61E-7170211IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-12170207IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.6E-13170211IPR009057Homeodomain-like
Gene3DG3DSA:3.40.50.1501.5E-51583799IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533354.18E-55598871IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE profilePS5168960.99600873IPR001737Ribosomal RNA adenine methyltransferase KsgA/Erm
TIGRFAMsTIGR007551.6E-58600869IPR011530Ribosomal RNA adenine dimethylase
PfamPF003981.1E-42601869IPR001737Ribosomal RNA adenine methyltransferase KsgA/Erm
SMARTSM006507.9E-57614799IPR020598Ribosomal RNA adenine methylase transferase, N-terminal
PROSITE patternPS011310630657IPR020596Ribosomal RNA adenine methylase transferase, conserved site
Gene3DG3DSA:1.10.8.1003.6E-15804871IPR023165rRNA adenine dimethylase-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000154Biological ProcessrRNA modification
GO:0009409Biological Processresponse to cold
GO:0000179Molecular FunctionrRNA (adenine-N6,N6-)-dimethyltransferase activity
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    Send to blast
MDIPANSSVM GTKNICLLLV LDDFTCHNIV SDMLHNQTYQ VLHVGKTMDT LNAVWERKSI  60
FNLVLTNIHR LNTNGVDILQ IIKNKLNLPT IFMSPDDTRC ENQVQDCCVG AYVVSFSDTK  120
EMNKFWQMVL EKEKGRKTVV NQEENDSRLP QNVTAETSRE NTTSADTDVA IKAHDLKEAV  180
PKKIVEIMNE PGLTREHVAS HLQKYRMCIK RAQESSAASI YDQILTNDAN AKCFQVQPYL  240
SPLNFSGSRG YAHSIQQPFQ THFQQGTGGI NCPTSGQMGS FQQQNSLLDF ANLQQADHNG  300
LIGQHSTFMP RIAHNSNFRV YGDKRKNMLF SIQSGNENQP TNSSNSDLEF LGFRLSTDGK  360
SVNFGHKSSS CTVIPNNAYS GLCSSISEDY IHKQQSSPQF LETPIGNTLI QSSSVQPENL  420
TFNHTSNSIS QQQNLLLFDN AVNTISCQIP EIPDSFIPQE QLAPQPSSKD LEDYSAILFG  480
DDEVYVPSLE NYDSIQQQYS APELPQVTLE ANSLVNRPIT AKELLMPSML HTLLPLSSTP  540
KPPANSPVYD GPFAVHSTRP KSLHTVAAVS KTTSETRINN KAEDDYHATL KALNSKGRFP  600
RKSLGQHYML NSEVNDQLVA AADVQEGDLV VEIGPGTGSL TNVLVNSGAT VLAIEKDPYM  660
AALVTERFSS LDCVKVLQED FTKCHIRSHL STVLQSGMNS SGVKTKYAKV VSNLPFNIST  720
EVIKQLLPMG DIFSEVVLLL QEEAAVRMVD SSLRSSEYRP INIFINFYSD PEYKFKVPRT  780
NFFPQPKVDA AVVSFRLKQP VDYPPVSSAK SFFSMVNCAF NGKRKMLRKT LQHICSSFEI  840
EEALASAGLP STSRPEELAL NDFVRLHNSI VKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ifs_A6e-3058987211289Ribosomal RNA small subunit methyltransferase A
6ifs_B6e-3058987211289Ribosomal RNA small subunit methyltransferase A
6ift_A6e-3058987211289Ribosomal RNA small subunit methyltransferase A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168044.10.0PREDICTED: two-component response regulator ARR14-like
TrEMBLK4AZC10.0K4AZC1_SOLLC; Uncharacterized protein
STRINGSolyc01g091810.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36591620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-20response regulator 2