PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g038300.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 196aa    MW: 23056.2 Da    PI: 4.9702
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g038300.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.92.2e-1129935128
               NAM  35 kevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapkge....ktdW 121
                       ++vd+y   ePw++ +   ++++  yf ++ +k++++ +r +r + + g+Wk +   k+v++++g+l+g  + + +  ++++k+       +W
  Sopen01g038300.1   2 QRVDLYAEkEPWEILE--GSNTNTGYFITPLKKEKSHHTRFKRtVGEGGTWKIQDPAKKVFDENGRLMGYVHRMKYTPANNKKAMikelFGEW 92 
                       5678775439****62..2345577******************6666999***************************544444332222579* PP

               NAM 122 vmheyrl 128
                       +m ey+l
  Sopen01g038300.1  93 LMMEYSL 99 
                       *****87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.1021124IPR003441NAC domain
SuperFamilySSF1019411.83E-139124IPR003441NAC domain
PfamPF023652.7E-41199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MQRVDLYAEK EPWEILEGSN TNTGYFITPL KKEKSHHTRF KRTVGEGGTW KIQDPAKKVF  60
DENGRLMGYV HRMKYTPANN KKAMIKELFG EWLMMEYSLY DRYVTNLRKK VVHKDFVICM  120
IKKKKKKQGC DDGKKKDENI MNEVEVNELI DSVMEELEEI DDDNREVDVG DDFLAALEDE  180
CSDANHINLD EYDFVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107126RKKVVHKDFVICMIKKKKKK
2122134KKKKKQGCDDGKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062530.11e-144uncharacterized protein LOC107008123 isoform X3
TrEMBLM0ZGR16e-97M0ZGR1_SOLTU; Uncharacterized protein
STRINGSolyc01g094490.2.11e-124(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385