PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g038390.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family BES1
Protein Properties Length: 695aa    MW: 77869.5 Da    PI: 5.4225
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g038390.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822140.51.6e-43692131135
            DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspess 93 
                       ggs+r ++ +E+E++k+RER+RRai+aki+aGLR++Gny+l++raD+n+V+ AL+reAGwvv +DGtt++  s+p+ + +a+g+ +++ ++ss
  Sopen01g038390.1  69 GGSRRCRPLEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVISALAREAGWVVLPDGTTFPSRSQPQGTGSAGGTPTTMVTSSS 161
                       6899************************************************************************99999999999888887 PP

            DUF822  94 lq.sslk....s.....salaspvesysaspksssfpspssldsislasaas 135
                       ++  + +    s     s ++   +++++++ks+ +p +s +ds s+a +++
  Sopen01g038390.1 162 SHiPTQHippgSlkgvpSGFQNTDDQSACQMKSVLVPTSSPYDSSSTARSQT 213
                       7643221111112122266777778888888899999988888887765543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.4E-3770202IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514454.82E-180252689IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.9E-197255689IPR013781Glycoside hydrolase, catalytic domain
PfamPF013736.7E-107261681IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-70292306IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-70313331IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-70335356IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.5E-9418427IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.3E-70428450IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-70501520IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-70535551IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-70552563IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-70570593IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.5E-9573583IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.3E-70610632IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.5E-9661675IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008424.5E-9676690IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MASEMQRYDT NEDDEEMGMD VKEEDDEDED DEEKNAAMHA IAGFDGVHGS SSSSRFQHHQ  60
QYQEQPTPGG SRRCRPLEEK ERTKLRERQR RAITAKILAG LRRHGNYNLR VRADINDVIS  120
ALAREAGWVV LPDGTTFPSR SQPQGTGSAG GTPTTMVTSS SSHIPTQHIP PGSLKGVPSG  180
FQNTDDQSAC QMKSVLVPTS SPYDSSSTAR SQTSAMVADG LDTQNDPFLV GSADSIDKQV  240
VDIHTKLQER DFAGTPYIPV YVMLPLGVIN MKSELVDADG LVKQLRVLKS INVDGVMVDC  300
WWGIVEANAP QDYNWNGYKR LFQVVREHKL KIKVVMSFHE CGGNIGDDVC IPLPHWVSEI  360
GRSNPDIYFT DRAGRRNPEC LSWGIDKERV LRGRTAVEVY FDYMRSFRVE FDEFFEDGII  420
SMVEVGLGPC GELRYPSNPV KHGWRYPGVG EFQCYDQYLL KKLRKAAEAR GHSFWARGPD  480
NAGSYNSRPQ ETGFFCDGGD YDGYYGRFFL NWYSQVLIDH ADRVLSLAKL AFDGTCIAAK  540
LSGIHWWYKT ASHAAELTAG FYNPSNRDGY VVIAAMLKKH GAALNFKCAE MRMLEEPVDF  600
CDALGDPEGL AWQVLNAAWD VSLPVCSENA LLCHDRGGYN CLLEKAKPLN DPDGKHIFAF  660
TYLRLSPLLM DGQNYMEFER FVKRMHGEAV LEFPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bfn_A1e-15225768811444BETA-AMYLASE
1bya_A1e-15225768811444BETA-AMYLASE
1byb_A1e-15225768811444BETA-AMYLASE
1byc_A1e-15225768811444BETA-AMYLASE
1byd_A1e-15225768811444BETA-AMYLASE
1q6c_A1e-15225768811444beta-amylase
1wdp_A1e-15225768811444Beta-amylase
1wdr_A1e-15225768811444Beta-amylase
1wds_A1e-15225768811444Beta-amylase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059070.10.0beta-amylase 7 isoform X3
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A3Q7EKY00.0A0A3Q7EKY0_SOLLC; Beta-amylase
STRINGSolyc01g094580.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]