PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g038810.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 136aa    MW: 15152.5 Da    PI: 5.8544
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g038810.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.38.4e-18957149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      k+ie+k +r++tf+kRr+g++KK +EL   Cdae+avi fs  g+++ +
  Sopen01g038810.1  9 KKIEDKAKRHTTFTKRRQGLFKKTKELVKRCDAEAAVITFSLAGNIFAF 57
                      68****************************************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.918161IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-16323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-22375IPR002100Transcription factor, MADS-box
PfamPF003194.2E-181057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MVRTKVEIKK IEDKAKRHTT FTKRRQGLFK KTKELVKRCD AEAAVITFSL AGNIFAFGHP  60
SVDTVVNRYI AATSAPEIGE VVPVDEEAVE DDVTLGLEVP LDDMGMDELD ELDRTMKEMK  120
KKVVDRIDGI ASGSKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085800.19e-94MADS-box transcription factor 47-like
RefseqXP_015085867.19e-94MADS-box transcription factor 47-like
TrEMBLA0A0V0H6094e-78A0A0V0H609_SOLCH; Putative MADS-box transcription factor 47-like
STRINGPGSC0003DMT4000002104e-78(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-20AGAMOUS-like 62