PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g038820.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 316aa    MW: 35364.2 Da    PI: 9.9582
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g038820.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-135397147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Sopen01g038820.1 53 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 97
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-1747103IPR009057Homeodomain-like
PROSITE profilePS5129415.40848102IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-651103IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-1851100IPR006447Myb domain, plants
SMARTSM007175.3E-1152100IPR001005SANT/Myb domain
PfamPF002492.6E-115397IPR001005SANT/Myb domain
CDDcd001671.85E-85598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGDPMKTGLM GLHPVQSGTS IHGNLNLDSN TGLVVSDDHS KKTRKPYTIT KSRESWTEQE  60
HDKFLEALQL FDRDWKKIEA FVGSKTVIQI RSHAQKYFLK VQKSGTSEHV PPPRPKRKAA  120
HPYPQKAPKK VISQVGSIQF QPPGALPEPG FGIGPDPLSV SGNTINFSPW TYDNVPAIST  180
IQMRKDDAQL SSGGVMQNCS SSSNENNPRI NKTKESNDQN ESQKQMKVMP DFAQVYSFIG  240
SVFDPSMRDH LQRLKKLDPI DIQTALMLMK NLSFNLSSPE FEDHRRLLSS YGLGAEKDKM  300
DLPIKTDFRG NAIRAI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085683.10.0protein REVEILLE 6-like isoform X2
SwissprotQ8H0W31e-100RVE6_ARATH; Protein REVEILLE 6
TrEMBLM0ZGW90.0M0ZGW9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000005460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.22e-88MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]