PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g039210.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 418aa    MW: 44556.3 Da    PI: 5.9823
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g039210.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.51.1e-21275337163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       e+elkre+rkq+NRe+ArrsR+RK+ae eeL+ +v++L++eN +L++e+++l ++++klk ++
  Sopen01g039210.1 275 ERELKREKRKQSNRESARRSRLRKQAEAEELAIRVQALTGENLTLRSEINKLMENSEKLKLNN 337
                       89*********************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.1E-37192IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165964.0E-37130255No hitNo description
Gene3DG3DSA:1.20.5.1704.4E-16269334No hitNo description
PfamPF001701.0E-20275337IPR004827Basic-leucine zipper domain
SMARTSM003384.3E-18275339IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.415277340IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-10278334No hitNo description
CDDcd147025.43E-20280328No hitNo description
PROSITE patternPS000360282297IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGNSEDGKSC KLEKPSSPAA DQSNLHVYPD WAAMQAYYGP RVAVPAYFNS AVAPGHTPHP  60
YMWGPQPMVP PYGTPYAAIY AHGGVYAHPG VPIGSHPPGH VMATSPVVSQ AMDGASLSLD  120
ASVKSSGNSD RGLMSKLKEF EGLAMSLGNG STDNVEGGTD NGHSQSGETE GSTDGSDTNG  180
AGVSERTKKR SCETTPDNSG DDKSHSQRCQ PTGEVNDDAE KAIVVAAKMT GTVLSPCMTT  240
LEMRNPASAH MKSSPTNGGS PLSPALPNET WLQNERELKR EKRKQSNRES ARRSRLRKQA  300
EAEELAIRVQ ALTGENLTLR SEINKLMENS EKLKLNNAAL MERLKTEQLG QTEEVSLGKI  360
DDKRLQPVGT VNLLARVNNS GSSDTTNEDG EVYENNSSGA KLHQLLDTSP RTDAVAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291297RRSRLRK
2291298RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTrans-activator of a beta-glucuronidase (GUS) reporter gene. Binds to a G-box-related element, (5'-GCAACGTGGC-3'). Also binds to the HEX-motif of wheat histone H3 promoter.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0133410.0BT013341.1 Lycopersicon esculentum clone 135142F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078991.10.0transcriptional activator TAF-1-like isoform X2
SwissprotQ991421e-148TAF1_TOBAC; Transcriptional activator TAF-1 (Fragment)
TrEMBLA0A3Q7ELE70.0A0A3Q7ELE7_SOLLC; Uncharacterized protein
STRINGSolyc01g095460.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31132447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-122G-box binding factor 3
Publications ? help Back to Top
  1. Oeda K,Salinas J,Chua NH
    A tobacco bZip transcription activator (TAF-1) binds to a G-box-like motif conserved in plant genes.
    EMBO J., 1991. 10(7): p. 1793-802
    [PMID:2050116]