PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g039620.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Protein Properties

Length: 169aa MW: 19794.6 Da PI: 8.2335

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g039620.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.7	3.6e-12	63	151	10	86
HHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 10 vlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +l+++r+ +p ++a++ +++ ++++++++d++g ++k++ +k+ +r v+ +GW++ v+ n+L gD + + + + Sopen01g039620.1 63 NLSLSRFLIPAECATNLlqhmteserekiQSDDDRGIDISVMDPKGDLHDMKFTEWKSLKRLVFNRGWNKLVENNQLHKGDLLSLWHYR 151 5677999***996669999988887775555699******999999999************************99887554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.0E-15	52	156	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.35E-15	53	153	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	8.755	54	167	IPR003340	B3 DNA binding domain
CDD	cd10017	1.82E-11	55	165	No hit	No description
Pfam	PF02362	2.0E-9	63	149	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MRLFGVQFSP LNNNNMQQQQ QRDDRVMDMP DLLPPSLRLN IESVRGSESV YMGRKYLENS 60 DTNLSLSRFL IPAECATNLL QHMTESEREK IQSDDDRGID ISVMDPKGDL HDMKFTEWKS 120 LKRLVFNRGW NKLVENNQLH KGDLLSLWHY RSFNNKPCFA VNIIPKPKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015081580.2	1e-124	putative B3 domain-containing protein At5g35780
TrEMBL	A0A3Q7EMI5	1e-112	A0A3Q7EMI5_SOLLC; Uncharacterized protein
STRING	Solyc01g095880.1.1	1e-113	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11679	11	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03170.1	2e-09	B3 family protein