PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g039850.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 256aa MW: 27212.1 Da PI: 9.0423

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g039850.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	47.1	5e-15	37	64	35	62
zf-Dof 35 aCrryWtkGGalrnvPvGggrrknkkss 62 +C ryWt+GG+lrnvPvGgg+rknk+ s Sopen01g039850.1 37 NCPRYWTEGGTLRNVPVGGGSRKNKRLS 64 8************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-8	26	62	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-9	37	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MESTQWSTHE EIGVVKSSMG AEIINKKVRP VKDGAINCPR YWTEGGTLRN VPVGGGSRKN 60 KRLSSSSSSQ KLPDLNPNPS SHHQNPNNIV IGSNQDLSLG FRTVPQDHHT SFHGVIPQFL 120 EFPKMDGSNN HLGSTQISAL ELLRTGIASR GFTSFISSAS TPDLNALYNS GFPFQELKPS 180 AGSTDHAASL SNSNYSSGGP GGLENGSGAR IMFPLGGLKQ LSSTNQVDHL TKGQENNNST 240 AGLYWSGMIS GTGGSW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015069878.1	1e-178	dof zinc finger protein DOF2.5-like
TrEMBL	A0A3Q7ELV1	1e-162	A0A3Q7ELV1_SOLLC; Uncharacterized protein
STRING	Solyc01g096120.2.1	1e-163	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	2e-28	Dof family protein