PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g040490.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 152aa    MW: 17572.3 Da    PI: 9.9747
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g040490.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3543.1e-1734128199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                       ffk +   +  +s++lvlpk+f++++g+k +e    +++d+ g+ W+v +  +k+ ++  ++++kGW++F k + Lk g f++F +d++++ +
  Sopen01g040490.1  34 FFKLF--LSDQSSQQLVLPKDFCRKFGEKMKE--RSKIKDLCGNFWDVCI--EKSEDGvvTFIGKGWEDFIKYQSLKNGYFLIFIYDDERDSS 120
                       77777..77778888***********766544..46788***********..8888888899*************************887777 PP

                       .EEEEE-S CS
                B3  92 lvvkvfrk 99 
                       ++vkvf++
  Sopen01g040490.1 121 FTVKVFST 128
                       8****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-1927131IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-1928131IPR015300DNA-binding pseudobarrel domain
CDDcd100172.34E-1532127No hitNo description
PROSITE profilePS5086312.12532129IPR003340B3 DNA binding domain
SMARTSM010191.2E-934129IPR003340B3 DNA binding domain
PfamPF023624.9E-1534128IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEKRKVGRPR KNEEKGKVAV IGTSSPVNRR PPEFFKLFLS DQSSQQLVLP KDFCRKFGEK  60
MKERSKIKDL CGNFWDVCIE KSEDGVVTFI GKGWEDFIKY QSLKNGYFLI FIYDDERDSS  120
FTVKVFSTNG CKKSVPMTIQ KTKGKDHVIV VE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-178HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085268.11e-107putative B3 domain-containing protein At5g66980
TrEMBLA0A3Q7EM711e-102A0A3Q7EM71_SOLLC; Uncharacterized protein
STRINGSolyc01g096790.2.12e-57(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1600666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-16B3 family protein