PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g041630.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 155aa    MW: 17273.8 Da    PI: 10.3363
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g041630.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.92e-111259249
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      +i  ++ r v fskRr+g++ K eEL  +   +v  +++s+ gk y+y
  Sopen01g041630.1 12 KITKQTARMVAFSKRRKGLFRKSEELESMSSSRVTSVVISPFGKPYTY 59
                      68999******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.53363IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-10362IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.27E-15472IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-11525IPR002100Transcription factor, MADS-box
PfamPF003192.9E-151259IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-112540IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-114061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MGTGKKKIEI EKITKQTARM VAFSKRRKGL FRKSEELESM SSSRVTSVVI SPFGKPYTYG  60
NVNSVIKKYF STCIRPEIST PAMNSHHSSS NVSGESLGSK SSSTPNGNGL RNWVEGIDVE  120
ECQNLNQLLM LKKQLEGTRE KIVSKESESF QALFM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081733.11e-110MADS-box protein SVP-like
TrEMBLA0A3Q7EMH51e-102A0A3Q7EMH5_SOLLC; Uncharacterized protein
STRINGSolyc01g098070.1.11e-103(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-11AGAMOUS-like 29