PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g044450.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 150aa    MW: 16800.7 Da    PI: 8.2041
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g044450.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.21.8e-105880527
                      --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                       C++f rtG+C+yGd+Ck+ H++
  Sopen01g044450.1 58 VCNHFVRTGYCQYGDSCKYYHPK 80
                      6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004513.0E-4338IPR003604Zinc finger, U1-type
SuperFamilySSF576674.13E-15452No hitNo description
PfamPF062201.4E-9538IPR013085Zinc finger, U1-C type
SMARTSM003564.1E-55380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2065381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-75681IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-75879IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-85880IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MPLGKYYCDY CDKEFQDTAA ARRRHLQGVQ HQRAKALWYD SLRNPLLFND PDSFGKGVCN  60
HFVRTGYCQY GDSCKYYHPK QNPQTVNQAG LPPGENSREG FHSSSQPFGS ASFPGDVFRE  120
KAGASLSNLP PSLRPPPEGG YPPLPFVEWG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-65HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069204.11e-109zinc finger CCCH domain-containing protein 3 isoform X2
SwissprotQ0JP111e-46C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A3Q7ENY21e-106A0A3Q7ENY2_SOLLC; Uncharacterized protein
STRINGSolyc01g100990.2.11e-107(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120081821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-30C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]