PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g044700.2

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 185aa MW: 21412.4 Da PI: 9.8113

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g044700.2	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00046	45	69	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C+ C+k ++ ++++ H+++ H Sopen01g044700.2 45 FFCELCNKQYKLAMEFEAHLSSydH 69 67*****************987666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	17	No hit	No description
Pfam	PF12171	3.3E-5	45	72	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	47	69	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MLRISCSFYY LVASTACFLH IMKIQVLAER EHKIETDVKE IRKTFFCELC NKQYKLAMEF 60 EAHLSSYDHN HRKRFKEMRE MHGSSRDDRH KREQQRQERE MAKFAQMAAN KKQQEQQTPE 120 EAGNIPAPSM VRTATALADQ DQRKTLKFGF SAKGGSSKVT TLVNKSAKKP KVTVASVFSN 180 ESDEE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240222	1e-118	AC240222.7 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-46a2 map 1, complete sequence.
GenBank	HG975440	1e-118	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	1e-118	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004230362.1	1e-114	G patch domain-containing protein 8
Refseq	XP_015056401.1	1e-114	G patch domain-containing protein 8
Refseq	XP_027773580.1	1e-114	G patch domain-containing protein 8
TrEMBL	A0A3Q7EPG3	1e-113	A0A3Q7EPG3_SOLLC; Uncharacterized protein
STRING	Solyc01g101250.2.1	1e-114	(Solanum lycopersicum)