PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g046220.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ZF-HD
Protein Properties Length: 202aa    MW: 23192.3 Da    PI: 8.6404
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g046220.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer72.37.5e-231164458
       ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                      v+Y eC++N Aa+  g+++DGCgEf+p+ g+  t++++ CaAC CHRnFHR+ ++
  Sopen01g046220.1 11 VKYLECRHNYAARSNGYVLDGCGEFCPT-GAPETPESFICAACHCHRNFHRKVEV 64
                      79*************************9.7777*******************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.4E-211163IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-121161IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-201261IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.2131362IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.97E-5137201IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-7144201IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MASNNNKHVF VKYLECRHNY AARSNGYVLD GCGEFCPTGA PETPESFICA ACHCHRNFHR  60
KVEVEVEDGA ESPIISINHP SYGTPLVIMD DPPPSQSKVR TGAQLCETSE KNNINVETKM  120
EMDGREIKVK KSKREYNGCS SSSVRIRLDP YQRKRIQIFA NEIMGWKWKK SHEQIIPFCD  180
EIGITPNFLK NWINNTRRRT RT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088823.11e-147zinc-finger homeodomain protein 4-like
TrEMBLA0A3Q7EQA51e-109A0A3Q7EQA5_SOLLC; Uncharacterized protein
STRINGSolyc01g103830.1.11e-112(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108891118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.15e-24homeobox protein 21