PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g046870.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 240aa    MW: 26221.6 Da    PI: 4.6408
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g046870.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.81.6e-14741135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C +Cg  +TplWR gp  ++ LCnaCGl++r k++
  Sopen01g046870.1  7 CCHCGIEQTPLWRPGPTEKPVLCNACGLRWRTKET 41
                      99**************99999**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-11542No hitNo description
CDDcd002029.45E-14639No hitNo description
PfamPF003203.8E-12741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.002737IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.1E-13741IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGKQGPCCHC GIEQTPLWRP GPTEKPVLCN ACGLRWRTKE TLDDYVPKHG STDLPSEMKP  60
HLLSRDDQKL EVGEEVSGQD GSSACLEEEM IKISSLGSAG SSPDKSIQME ETNDKDPLPR  120
RKISKLRHGI LSPAQIQRTL DNYLQGPDFE IISDEDEPVT LIYARNKYIP PNEIGLGAML  180
LVSPTTTTER STPLSAMAVP PNEIGHEPTL LVSPTTTIEH STPQSAMAED TVSCSMDVSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769745.11e-165GATA transcription factor 26-like
TrEMBLM1DU471e-114M1DU47_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000944301e-115(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125821014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-23GATA transcription factor 26