PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g046890.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 250aa    MW: 27361.9 Da    PI: 4.5387
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g046890.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA37.43.6e-122251635
              GATA  6 ttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       +kT lWR gp  ++ LCnaCGl++r k++
  Sopen01g046890.1 22 ESKTRLWRPGPTEKPVLCNACGLRWRTKET 51
                      579********99999**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.8E-4969IPR000679Zinc finger, GATA-type
PfamPF003206.2E-102251IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-62352No hitNo description
Gene3DG3DSA:3.30.50.106.0E-92351IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.96E-92449No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEIPYLVAGG GERSGQQLAV QESKTRLWRP GPTEKPVLCN ACGLRWRTKE TLDDYVPKHG  60
STELPSEMNP DLLSRDDQKL EVGKEVSGQD GSSACLEEEM IKISSLGSAV SSPDKCMQME  120
ETNDKDPLPR RKISKPRHGI LSPAQIQRTL DNYLQGPDFE IISDEDEPVT LIYARTKYIP  180
PNEIGLGAML LVSPTTTTER STPLSAMAVP PNEIGHEPTL LVSPTTTIEH STPQSAMAED  240
TVSCSMDVSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769745.11e-156GATA transcription factor 26-like
TrEMBLM1DU471e-111M1DU47_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000944301e-112(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125821014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.21e-12GATA transcription factor 26