 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopen01g046900.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
GATA |
| Protein Properties |
Length: 254aa MW: 28046.9 Da PI: 8.2614 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen01g046900.1 | genome | spenn | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 32.6 | 1.1e-10 | 57 | 84 | 8 | 35 |
GATA 8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35
kTplWR gp ++ LCnaCG ++ +g+
Sopen01g046900.1 57 KTPLWRPGPTAKPVLCNACGSRWETRGT 84
8********99999*********99886 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 254 aa
Download sequence Send
to blast |
MDKQGPCCLC GIELSSDILL WFVGHQDGIG GFLLTGGGSA TKKYRGSEKE RGQGDCKTPL 60
WRPGPTAKPV LCNACGSRWE TRGTLDDYLP EHASKGKQSY QLPSEVKPHL IARDDQKLEV 120
GEEVSRQDGS SACLEEKMIH ISSLGSARSS SDKCMQMQET NVQTRDTEKQ IPDLLSKLQS 180
KNRWLSISLV KLHKKHPGTS CLPFFCSISC VKHALFITSQ VRHFTFVGVA HSRNSSRDVV 240
DPQPSAGDLF CRHC
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975440 | 1e-176 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
