PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g047280.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 384aa    MW: 43926.3 Da    PI: 6.8478
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g047280.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.47.1e-2282170186
          trihelix   1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdqle 86 
                       +W++++v++Li+a ++++e+  ++    kk++W+++s +m+erg+ +sp+qC++k+++lnk+++++++  +++t ++++++ ++++ ++
  Sopen01g047280.1  82 KWSDDMVKLLITALSYIGEDALSNGvlVKKGKWRAISCVMSERGYCVSPQQCEDKFNDLNKKFRRLNDVLGRGTaCNVVENPVLLEMMD 170
                       7****************998776533499********************************************5499999988888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-2080195No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MQVNHHLAGY PNQGPVVLMQ HAPQVRSSGV SNMEDTPQEM QLLDAVRLNR VEMPESYHEG  60
LNDAREVSGH TEGKQPVYQR MKWSDDMVKL LITALSYIGE DALSNGVLVK KGKWRAISCV  120
MSERGYCVSP QQCEDKFNDL NKKFRRLNDV LGRGTACNVV ENPVLLEMMD LPNDLKEEMN  180
KILGSRQLFY EEMCSYNNQN RLFLPHDPVV QQSVFWAVRG KYKYETGSMS QDLPLKRNIG  240
GEESLDHNTT ADPNLVQHMP AKRKARGEER NLHMARLSLN GTATLDPDPN MLYPNSNGIQ  300
LSLNNKEKKI QDEHVLLRLQ KMEEQKLLIQ GKLLELEKQR VNLEISCSEE DMGLQKMQLD  360
NKVIKLENQQ LMLELKCGGK QRLV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00242DAPTransfer from AT1G76870Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062075.10.0uncharacterized protein LOC107007801
RefseqXP_015062077.10.0uncharacterized protein LOC107007801
RefseqXP_027774129.10.0uncharacterized protein LOC107007801
TrEMBLA0A3Q7FAV20.0A0A3Q7FAV2_SOLLC; Uncharacterized protein
STRINGSolyc01g104760.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125851620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.14e-70