PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g047410.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 195aa MW: 22483.9 Da PI: 4.6127

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g047410.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	118.1	8.2e-37	8	128	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrF Ptdeelvv++L++k++ +++ +vi+++++y ++PwdL+ k+ e ++wyf+s+r + +r+t++gyWk+ g d++++ Sopen01g047410.1 8 LPPGFRFYPTDEELVVHFLQRKAALLPCHP-DVIPDLNLYPYDPWDLDGKAMVEGNKWYFYSRRTQ--------SRITENGYWKSLGVDEPIF 91 79***********************999.99**********977777899**9854........799************** PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ ++++vg+kk +fy g+ p+g+kt+Wvm+e++l Sopen01g047410.1 92 STghSNNNVGMKKYYAFYLGELPEGVKTNWVMQEFSL 128 9777778**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.11E-46	6	160	IPR003441	NAC domain
PROSITE profile	PS51005	45.307	8	162	IPR003441	NAC domain
Pfam	PF02365	5.4E-22	9	128	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MGDSNVKLPP GFRFYPTDEE LVVHFLQRKA ALLPCHPDVI PDLNLYPYDP WDLDGKAMVE 60 GNKWYFYSRR TQSRITENGY WKSLGVDEPI FSTGHSNNNV GMKKYYAFYL GELPEGVKTN 120 WVMQEFSLNS ESSSGSSRSS SKRRTRSKID YSGWVICRVY EHNYDNDDDD NGPELSCLDE 180 VFLSLDDLDE ISLPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-37	4	163	13	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-37	4	163	13	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-37	4	163	13	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-37	4	163	13	166	NO APICAL MERISTEM PROTEIN
3swm_A	3e-37	4	163	16	169	NAC domain-containing protein 19
3swm_B	3e-37	4	163	16	169	NAC domain-containing protein 19
3swm_C	3e-37	4	163	16	169	NAC domain-containing protein 19
3swm_D	3e-37	4	163	16	169	NAC domain-containing protein 19
3swp_A	3e-37	4	163	16	169	NAC domain-containing protein 19
3swp_B	3e-37	4	163	16	169	NAC domain-containing protein 19
3swp_C	3e-37	4	163	16	169	NAC domain-containing protein 19
3swp_D	3e-37	4	163	16	169	NAC domain-containing protein 19
4dul_A	2e-37	4	163	13	166	NAC domain-containing protein 19
4dul_B	2e-37	4	163	13	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-158	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015083878.1	1e-144	NAC domain-containing protein 104
Swissprot	Q8GWK6	4e-82	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A0V0HHT6	1e-116	A0A0V0HHT6_SOLCH; Putative NAC transcription factor 25-like
STRING	Solyc01g104900.2.1	1e-112	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	4e-78	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]