PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g047740.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CAMTA
Protein Properties Length: 1049aa    MW: 118478 Da    PI: 5.4465
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g047740.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1178.11.1e-55201363118
              CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                       +e ++rwl++ ei++iL n++k++lt e++ rp sgs++L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+ee+ +f
  Sopen01g047740.1  20 SEvQHRWLRPAEICEILRNHRKFHLTPEAPFRPVSGSVFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEEDDNF 112
                       5559***************************************************************************************** PP

              CG-1  95 qrrcywlLeeelekivlvhylevk 118
                       qrr+yw+Le++l +iv+vhylevk
  Sopen01g047740.1 113 QRRSYWMLEQDLMHIVFVHYLEVK 136
                       *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.49415141IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-7818136IPR005559CG-1 DNA-binding domain
PfamPF038599.5E-4922135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.2E-6459548IPR013783Immunoglobulin-like fold
SuperFamilySSF812963.27E-17463549IPR014756Immunoglobulin E-set
PfamPF018332.6E-7463548IPR002909IPT domain
SuperFamilySSF484033.11E-15650753IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.2E-14657755IPR020683Ankyrin repeat-containing domain
CDDcd002041.04E-12661751No hitNo description
PROSITE profilePS5029716.6663748IPR020683Ankyrin repeat-containing domain
SMARTSM002480.003696725IPR002110Ankyrin repeat
PROSITE profilePS500889.778696728IPR002110Ankyrin repeat
SMARTSM002482700735764IPR002110Ankyrin repeat
SMARTSM000155.8870892IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525408.23E-7870921IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500968.004871900IPR000048IQ motif, EF-hand binding site
PfamPF006120.003872891IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0072893915IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.157894918IPR000048IQ motif, EF-hand binding site
PfamPF006127.8E-4896915IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1049 aa     Download sequence    Send to blast
MEDCGSDPPG FRLDITQILS EVQHRWLRPA EICEILRNHR KFHLTPEAPF RPVSGSVFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEEDD NFQRRSYWML  120
EQDLMHIVFV HYLEVKGNKV NVSSIRSTKS VHPNYLNDCS LSDSFPTRHK KLTSANADST  180
SLASTLTEAH EEAESEDSHQ ACSRFHSYPD RASGMDSHLV ENRDTISSSY GSPQSSVEYT  240
PLPGIDGSGK CDLGNFASGP QRTIDLGSWE PLPQHCSNGE MVCQDDFKNN LSVHGNWQYS  300
FGQSPLQFHG QNVNQDLIAD SSYDLGLPWD LLTVRGPSYL CSNEKEEQLT QLNLQFLKSL  360
VEVQGDINQE NSMDMLELGD YSTIKQPHLS SVKVEEGLKK VDSFSRWVAK ELEDVEELHM  420
QPSNQMSWNV IDTEEEGSCL PSQLHVDSDS LNLSLSQEQV FSIIDFSPNW AYSNLETKIL  480
ITGRFLKSEG ELVEYKWSCM FGEVEVPAEV LADGVLRCHA PPHKPGVLPF YVTCSNRLAC  540
SEVREFEYRF GPYQEVGAAD VSMTEKHLLE RIENLLSLGP VSSCRSSDSM EDSEEKRSTV  600
NKIISMMEEE NKQIIERASY GDTSQCRVKE DLYFERKLKQ NFYAWLVHQV TDDGRGRTLL  660
DGEGQGVLHL VAALGYDWAF KPILASGLSV DFRDMNGWTA LHWAAFYGRE KTVVSLVSLG  720
ASPGALTDPS AEFPLGRTPA DLASANGHKG ISGFVAESSL TTHLSKLTVT DAKEELDSEV  780
CEAKVGETVT ERVAVSTTES DVPDVLSLKD SLAAIRNATQ AAARIHQIFR VQSFQRKQII  840
ENCDNELSSD ENAIAIVASR ACKLGQNNGI AHAAAIQIQK KFRGWNKRKE FLLIRQKIVQ  900
IQAHIRGHQV RKKYKPIIWS VGILEKVILR WRRKRSGLRG FRSEAVMSKP STQEDSLPED  960
DYDFLKEGRK QTEVRMQKAL ARVKSMTQYS EGRAQYRRLL TAAEGLREVK QDGPIQIPEI  1020
PEDTIYPEEE LFDVDSLLDD DTFMSIAFE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5588100.0JN558810.1 Solanum lycopersicum calmodulin-binding transcription factor SR1L mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062177.10.0calmodulin-binding transcription activator 2 isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A3Q7ER350.0A0A3Q7ER35_SOLLC; Uncharacterized protein
STRINGSolyc01g105230.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22302146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]