PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g047740.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CAMTA
Protein Properties Length: 1040aa    MW: 117470 Da    PI: 5.4465
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g047740.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1178.21.1e-55201363118
              CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                       +e ++rwl++ ei++iL n++k++lt e++ rp sgs++L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+ee+ +f
  Sopen01g047740.2  20 SEvQHRWLRPAEICEILRNHRKFHLTPEAPFRPVSGSVFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEEDDNF 112
                       5559***************************************************************************************** PP

              CG-1  95 qrrcywlLeeelekivlvhylevk 118
                       qrr+yw+Le++l +iv+vhylevk
  Sopen01g047740.2 113 QRRSYWMLEQDLMHIVFVHYLEVK 136
                       *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.49415141IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-7818136IPR005559CG-1 DNA-binding domain
PfamPF038599.4E-4922135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.2E-6450539IPR013783Immunoglobulin-like fold
SuperFamilySSF812963.11E-17454540IPR014756Immunoglobulin E-set
PfamPF018332.6E-7454539IPR002909IPT domain
SuperFamilySSF484035.6E-15645744IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.6E-14648746IPR020683Ankyrin repeat-containing domain
CDDcd002041.03E-12652742No hitNo description
PROSITE profilePS5029716.6654739IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.778687719IPR002110Ankyrin repeat
SMARTSM002480.003687716IPR002110Ankyrin repeat
SMARTSM002482700726755IPR002110Ankyrin repeat
SuperFamilySSF525408.23E-7861912IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000155.8861883IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.004862891IPR000048IQ motif, EF-hand binding site
PfamPF006120.0029863882IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0072884906IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.157885909IPR000048IQ motif, EF-hand binding site
PfamPF006127.7E-4887906IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1040 aa     Download sequence    Send to blast
MEDCGSDPPG FRLDITQILS EVQHRWLRPA EICEILRNHR KFHLTPEAPF RPVSGSVFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEEDD NFQRRSYWML  120
EQDLMHIVFV HYLEVKGNKV NVSSIRSTKS VHPNYLNDCS LSDSFPTRHK KLTSANADST  180
SLASTLTEAH EEAESEDSHQ ACSRFHSYPD RASGMDSHLV ENRDTISSSY GSPQSSVEYT  240
PLPGIDGSGK CDLGNFASGP QRTIDLGSWE PLPQHCSNGE MVCQDDFKNN LSVHGNWQFH  300
GQNVNQDLIA DSSYDLGLPW DLLTVRGPSY LCSNEKEEQL TQLNLQFLKS LVEVQGDINQ  360
ENSMDMLELG DYSTIKQPHL SSVKVEEGLK KVDSFSRWVA KELEDVEELH MQPSNQMSWN  420
VIDTEEEGSC LPSQLHVDSD SLNLSLSQEQ VFSIIDFSPN WAYSNLETKI LITGRFLKSE  480
GELVEYKWSC MFGEVEVPAE VLADGVLRCH APPHKPGVLP FYVTCSNRLA CSEVREFEYR  540
FGPYQEVGAA DVSMTEKHLL ERIENLLSLG PVSSCRSSDS MEDSEEKRST VNKIISMMEE  600
ENKQIIERAS YGDTSQCRVK EDLYFERKLK QNFYAWLVHQ VTDDGRGRTL LDGEGQGVLH  660
LVAALGYDWA FKPILASGLS VDFRDMNGWT ALHWAAFYGR EKTVVSLVSL GASPGALTDP  720
SAEFPLGRTP ADLASANGHK GISGFVAESS LTTHLSKLTV TDAKEELDSE VCEAKVGETV  780
TERVAVSTTE SDVPDVLSLK DSLAAIRNAT QAAARIHQIF RVQSFQRKQI IENCDNELSS  840
DENAIAIVAS RACKLGQNNG IAHAAAIQIQ KKFRGWNKRK EFLLIRQKIV QIQAHIRGHQ  900
VRKKYKPIIW SVGILEKVIL RWRRKRSGLR GFRSEAVMSK PSTQEDSLPE DDYDFLKEGR  960
KQTEVRMQKA LARVKSMTQY SEGRAQYRRL LTAAEGLREV KQDGPIQIPE IPEDTIYPEE  1020
ELFDVDSLLD DDTFMSIAFE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5588100.0JN558810.1 Solanum lycopersicum calmodulin-binding transcription factor SR1L mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062179.10.0calmodulin-binding transcription activator 2 isoform X4
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A3Q7ER350.0A0A3Q7ER35_SOLLC; Uncharacterized protein
STRINGSolyc01g105230.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]