PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g048640.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 356aa    MW: 41499.4 Da    PI: 5.4479
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g048640.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.1e-1937123193
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k++  s  ++ +rl +p +f+  ++ + + +k++ l+d+ g+ W v +  +k +g  +++ GW++F ++n +++gDf+vF +dg++ f ++
  Sopen01g048640.2  37 FVKIF--SPENSGKRLKIPTSFT-YYK-NRKLPKKINLRDRFGNMWPVGV--NKIGGNLYFQYGWEKFIEDNSVEVGDFLVFDYDGNKMFDFK 123
                       78888..66667778*******8.554.446999****************..*********************************99877444 PP
2B331.72.7e-102613431094
                       HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                       + ++++l++p + +++++++   +  +t++d+ gr++  kl+ +k  gr++l +GW++ ++ n ++ +D ++ ++++  +++ l++
  Sopen01g048640.2 261 SKRRDQLYVPVDVVKDYKLE--LPSSMTIRDSIGREFVTKLKKWKD-GRIWLVGGWRSLCRWNLVEKNDHCICEFVRGkRNKDLHL 343
                       567899***********988..55569999***********87777.5899*********************99774434443333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-2133128IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.02935128IPR003340B3 DNA binding domain
SuperFamilySSF1019361.06E-2036130IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-1337128IPR003340B3 DNA binding domain
CDDcd100171.50E-1537125No hitNo description
PfamPF023621.1E-1637122IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-17248336IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-16248348IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.643252351IPR003340B3 DNA binding domain
CDDcd100171.07E-7253345No hitNo description
SMARTSM010194.9E-6255351IPR003340B3 DNA binding domain
PfamPF023629.9E-9261345IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGRTTEEQAG GSHRQSETGS ARTVLGLTTK EKMEKGFVKI FSPENSGKRL KIPTSFTYYK  60
NRKLPKKINL RDRFGNMWPV GVNKIGGNLY FQYGWEKFIE DNSVEVGDFL VFDYDGNKMF  120
DFKLLGRTKC EKNGVGGLKA EEMIVEHQKS RESKEKNWAS DSCNSFSSYD DDVEYMGDED  180
EDEDEDEDEE YKETKKVPCH VEEEEEEQED DEDEEEEDEA LRSKAFACKV RNRHDHFGVD  240
IFKSGRATQP KNPYFVAKIR SKRRDQLYVP VDVVKDYKLE LPSSMTIRDS IGREFVTKLK  300
KWKDGRIWLV GGWRSLCRWN LVEKNDHCIC EFVRGKRNKD LHLRVQVLHE GESSVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A4e-12341308104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071035.10.0B3 domain-containing protein At5g60130-like
RefseqXP_015071045.10.0B3 domain-containing protein At5g60130-like
TrEMBLM1AQ141e-176M1AQ14_SOLTU; Uncharacterized protein
STRINGSolyc01g106230.2.10.0(Solanum lycopersicum)
STRINGSolyc01g106250.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.17e-19B3 family protein