PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g049000.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 221aa MW: 25026.9 Da PI: 10.5739

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g049000.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69.3	3.5e-22	18	63	4	49
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n sn qvtfskRr+g++KKA+EL++LC+ae+ ++ifs+ +k++ + Sopen01g049000.1 18 KNASNLQVTFSKRRAGLFKKASELCILCGAEIVIVIFSPGDKVFSF 63 899**************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-30	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.857	7	67	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.79E-31	8	76	No hit	No description
SuperFamily	SSF55455	2.49E-25	8	90	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.3E-18	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.8E-23	17	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.3E-18	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.3E-18	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MARRVSKGRQ RVEMVKMKNA SNLQVTFSKR RAGLFKKASE LCILCGAEIV IVIFSPGDKV 60 FSFGHPSVGT LVDRFLGRDL PPPNNDVHNQ LIVAHREAGI RELNMKLMNL EGVLQMEKKY 120 GESLREIRRR ANDQWWESPI EKLNLFQLQH LKEALESLVQ KVEKVAQQQQ MVNNYAFPFQ 180 KLGSAWTPPN CARESSSYGP NVGAPFANRA IRSTSSIVPN H

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015082426.1	1e-165	agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	5e-51	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	A0A3Q7ERW9	1e-135	A0A3Q7ERW9_SOLLC; Uncharacterized protein
STRING	Solyc01g106730.1.1	1e-141	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA204	24	223

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	3e-53	AGAMOUS-like 62

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]