PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g050370.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Protein Properties

Length: 224aa MW: 25915.7 Da PI: 9.4098

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g050370.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.7	1.4e-15	129	218	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k +++s+v+ +l lp +f+++h k + +tl de+g +++ k+ k++ l++GW++++ +++L +gD +vF+l+ ++f + Sopen01g050370.1 129 FVKPMLQSHVTGGFWLGLPVHFCKTHLPK--HDEYVTLVDENGDEFQTKYLALKTG----LSGGWRGYALDHELIDGDALVFQLVAPTRF--K 213 89**********************433..3347***********666666....*********************9986777..8 PP EEEE- CS B3 94 vkvfr 98 v ++r Sopen01g050370.1 214 VYIIR 218 88877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.37E-23	122	220	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.8E-19	123	220	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.42E-26	127	218	No hit	No description
Pfam	PF02362	6.8E-14	129	218	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.617	129	220	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-19	129	220	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MAELKKKLAY EECRLKRIEE NKKRWQELKL TMLAEDVHNA TNPKPSPMKK AKPTVRQEVD 60 RSAVRRSNRV ADKPPPNYKE VPIEPLGRPR SYKRKDLLNR VYAADEDRQY AIGRAEQLQS 120 ELDVDFPSFV KPMLQSHVTG GFWLGLPVHF CKTHLPKHDE YVTLVDENGD EFQTKYLALK 180 TGLSGGWRGY ALDHELIDGD ALVFQLVAPT RFKVYIIRVN QVED

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-113	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015060829.1	1e-167	B3 domain-containing protein At3g19184-like
Swissprot	Q1G3M3	1e-82	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A3Q7ESF5	1e-164	A0A3Q7ESF5_SOLLC; Uncharacterized protein
STRING	Solyc01g108140.2.1	1e-165	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-85	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]