PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g050520.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 406aa    MW: 45091.3 Da    PI: 7.9567
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g050520.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.84.9e-33262317156
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                       k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  Sopen01g050520.1 262 KQRRCWSPELHRRFVDALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 317
                       79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-30259320IPR009057Homeodomain-like
PROSITE profilePS5129414.362259319IPR017930Myb domain
SuperFamilySSF466892.79E-18260320IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-27262317IPR006447Myb domain, plants
PfamPF002495.0E-8264315IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGSIPAELSL DCRPSFIPKS ITDFLRQLSL IRNVPDKLSQ IDDYITRLED EMRKIDAFKR  60
ELPLSVLLVK DAIVALREES MQYRKSRTEP VLEEFIPLKK SSHEDTKAEI TKDKDSREKM  120
SWMSSVQLWN SESHCENTDE AINKQQSKSE LKVDTQRSPE EGNSSVTEDP FQSCKTMNVA  180
KAFSVPFKGY SGFSVTAVRK DNKDELPGLS LHTPGITKLR EDTVTSGLNS KHSGSRGGLS  240
SVAGGQSNIR TGSLAQQQSS RKQRRCWSPE LHRRFVDALQ QLGGSQVATP KQIRELMQVD  300
GLTNDEVKSH LQKYRLHTRR TPNSQTQPAN QSGVALGNLW MSQGQYGESS KQSSSQSGSP  360
QGPLHLAGSC GGTSTTVGDS MDEEDDVKSE NHSWKNHVHT SGKVDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-13262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-13262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-13262315154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-13262315154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-13262315154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-13262315154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-13262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-13262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-13262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-13262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-13262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-13262315255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062924.10.0transcription factor HHO6
TrEMBLA0A3Q7EST30.0A0A3Q7EST3_SOLLC; Uncharacterized protein
STRINGSolyc01g108300.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43612443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-57G2-like family protein