PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g051890.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 438aa    MW: 49279.2 Da    PI: 6.2025
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g051890.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09243290455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sopen01g051890.1 243 SHSLAERVRREKISERMRFLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 290
                       8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-16237306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.68E-10237294No hitNo description
PROSITE profilePS5088815.485239289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16239306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6243290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-8245295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MNIALPEMLH NITSNGSSEL SVLERQRDRM KWQVQQQEMS YFNGQNDQLM NSFHQTAEAQ  60
QFHGLINVND QSLNELVTRA IKPDPCMENS WGDFGTTGTN GFDYVPVGVG HGGMSHPSEM  120
NYAISRTTSC PPTMADNVVK PKETMLSSNR GRESFKKRKA DKNQHLKEVA EEGTKDKKFK  180
ECIEEEDDSS KVTTEKKSNK WSATNSSNSK ENSDTSKEKS KITDDKKLDY IHVRARRGQA  240
TDSHSLAERV RREKISERMR FLQDLVPGCN KITGKAGMLD EIINYVQSLQ RQVEFLSMKL  300
AAVNPRLDID ADNFFNKDIF ATSTSTFSAV GAGTSSEMLS MAQRQFNSLQ QIMSSSGLEM  360
GILNLNEMAL RRTTSAPVPI PEMFLDSSSI NQVQSFQTWN TDLDNMYAME LQQGRSAQFL  420
PHPCTGFAEA GHDLKMEM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0143000.0BT014300.1 Lycopersicon esculentum clone 133550R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062388.10.0transcription factor bHLH63-like
TrEMBLA0A3Q7EUU60.0A0A3Q7EUU6_SOLLC; Uncharacterized protein
STRINGSolyc01g109700.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65382330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.14e-60cryptochrome-interacting basic-helix-loop-helix 1