PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g052300.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SRS
Protein Properties Length: 216aa    MW: 24361.1 Da    PI: 8.2168
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g052300.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702180.76.1e-56181525154
            DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 
                       +++CqdCGnqakkdC+++RCRtCCksrgf+C+thvkstWvp++ rr r++ l+ ++ ++++ ++  ++kr r++               +   
  Sopen01g052300.1  18 SSRCQDCGNQAKKDCTYMRCRTCCKSRGFHCETHVKSTWVPVSTRRPRHHLLHHTTIQQQQLQNGPNPKRYRSN---------------EVIG 95 
                       579*********************************************99988877666555454455554443...............1122 PP

            DUF702  98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                          e  s+P evss+avfrc+rvss+d+  +++aYqt+v+i+GhvfkGiLydqG+++
  Sopen01g052300.1  96 DDHEGGSFPGEVSSPAVFRCIRVSSIDNVVDQYAYQTSVKIAGHVFKGILYDQGPDN 152
                       3456789************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.5E-6018151IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.7E-272162IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.8E-27103150IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MMRREEEEEG RVSSSLSSSR CQDCGNQAKK DCTYMRCRTC CKSRGFHCET HVKSTWVPVS  60
TRRPRHHLLH HTTIQQQQLQ NGPNPKRYRS NEVIGDDHEG GSFPGEVSSP AVFRCIRVSS  120
IDNVVDQYAY QTSVKIAGHV FKGILYDQGP DNESPRYNNY MAGESSSSDF QLHQPLILPP  180
TTTTTTSPPP STSTYPNLFS AFNMPGTQFF QYPKSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087135.11e-163protein SHI RELATED SEQUENCE 1
TrEMBLM1D2031e-105M1D203_SOLTU; Uncharacterized protein
STRINGSolyc01g110140.2.11e-122(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41562445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-46SHI-related sequence 5