PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g001180.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 146aa    MW: 16703.4 Da    PI: 10.7197
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g001180.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57340.86e-1330113592
            DUF573   5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlv.eKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                       + w++eDei +L+Gli+ k+++g + s d  ++ + +k+s+  k ++  ql  +K++ L +K+k++ kk     + + + +h+++ f ls
  Sopen02g001180.1  30 SAWTKEDEIKILKGLIKLKTEKG-KISLDYVQLNNSIKQSLAHKsATPLQLQkKKMKYLGEKYKNNLKK-----SRTPTIPHEEELFFLS 113
                       57*********************.55779999********9877255679972579***********99.....4445556666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-1031115IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MLRRGKLMPA ATAGSEKMIK KNKATSEKVS AWTKEDEIKI LKGLIKLKTE KGKISLDYVQ  60
LNNSIKQSLA HKSATPLQLQ KKKMKYLGEK YKNNLKKSRT PTIPHEEELF FLSDKQGRSA  120
NHEPTTYNVF FQFGSSTTYN FFSGRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165521.11e-51PREDICTED: uncharacterized protein LOC102593685 isoform X3
TrEMBLM1B5N91e-51M1B5N9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000376642e-52(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1376078