PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g001870.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Nin-like

Protein Properties

Length: 201aa MW: 23443.9 Da PI: 7.2044

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g001870.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	52.3	1.1e-16	54	89	17	52
RWP-RK 17 pikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++ +A+keL ++lT LK++CR++GI+RWP Rk+ sl Sopen02g001870.1 54 SVISASKELHIGLTHLKKRCRNLGIRRWPCRKLMSL 89 5668*****************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.308	23	109	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-12	57	89	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MESDQCSRQI KASLPFPNEC LNSLTGFSEF SGHHAIDPLM EKEYNTSVDS SFYSVISASK 60 ELHIGLTHLK KRCRNLGIRR WPCRKLMSLQ TIINNVKELE NGVGNEMKEK LKDMINVLEK 120 EKKKIEEIPD MEIEEKTKKL RQICNMKNHK KRRLMSSMPH QLHPFFDTYC TTSTPPHNVE 180 EDDEEIMSLL ANYSYYDTLT L

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	1e-177	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019067250.2	5e-91	protein RKD1-like isoform X4
Swissprot	Q9M9U9	5e-34	RKD1_ARATH; Protein RKD1
TrEMBL	A0A494G8A9	1e-90	A0A494G8A9_SOLLC; Uncharacterized protein
STRING	Solyc03g116010.1.1	8e-44	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4274	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-25	RWP-RK domain-containing protein