 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sopen02g006770.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
| Family | NF-YA | ||||||||
| Protein Properties | Length: 1989aa MW: 225101 Da PI: 9.3952 | ||||||||
| Description | NF-YA family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | CBFB_NFYA | 34.3 | 7.6e-11 | 1838 | 1872 | 1 | 36 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36
+ep++VNaKQy++Il+ Rq+ ak+e+++kl ksr+
Sopen02g006770.1 1838 EEPVFVNAKQYHGILRLRQSCAKAESDNKL-LKSRR 1872
69***************************9.55554 PP
| |||||||
| 2 | CBFB_NFYA | 44.2 | 6.3e-14 | 1943 | 1977 | 1 | 36 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36
+ep++VNaKQy++Il+RRq+Rak+e ++kl ksrk
Sopen02g006770.1 1943 EEPVFVNAKQYHGILRRRQSRAKAEPNTKL-LKSRK 1977
69***************************9.88887 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57756 | 4.19E-7 | 139 | 177 | IPR001878 | Zinc finger, CCHC-type |
| Gene3D | G3DSA:4.10.60.10 | 1.4E-11 | 149 | 172 | IPR001878 | Zinc finger, CCHC-type |
| SMART | SM00343 | 3.8E-5 | 156 | 172 | IPR001878 | Zinc finger, CCHC-type |
| Pfam | PF00098 | 7.0E-6 | 156 | 172 | IPR001878 | Zinc finger, CCHC-type |
| PROSITE profile | PS50158 | 11.054 | 157 | 172 | IPR001878 | Zinc finger, CCHC-type |
| SuperFamily | SSF56672 | 1.19E-34 | 253 | 415 | No hit | No description |
| Gene3D | G3DSA:3.10.10.10 | 1.9E-18 | 263 | 329 | No hit | No description |
| CDD | cd09274 | 1.41E-42 | 322 | 423 | No hit | No description |
| Pfam | PF03732 | 7.5E-17 | 616 | 709 | IPR005162 | Retrotransposon gag domain |
| Gene3D | G3DSA:4.10.60.10 | 1.4E-11 | 797 | 817 | IPR001878 | Zinc finger, CCHC-type |
| SMART | SM00343 | 0.013 | 801 | 817 | IPR001878 | Zinc finger, CCHC-type |
| PROSITE profile | PS50158 | 8.796 | 802 | 817 | IPR001878 | Zinc finger, CCHC-type |
| SuperFamily | SSF50630 | 2.64E-8 | 890 | 986 | IPR021109 | Aspartic peptidase domain |
| CDD | cd00303 | 4.66E-16 | 892 | 979 | No hit | No description |
| Pfam | PF13650 | 1.4E-8 | 892 | 979 | No hit | No description |
| SuperFamily | SSF56672 | 6.45E-133 | 1059 | 1431 | No hit | No description |
| PROSITE profile | PS50878 | 9.655 | 1067 | 1266 | IPR000477 | Reverse transcriptase domain |
| Gene3D | G3DSA:3.10.10.10 | 1.1E-11 | 1085 | 1143 | No hit | No description |
| CDD | cd01647 | 1.72E-62 | 1118 | 1266 | No hit | No description |
| Pfam | PF00078 | 1.2E-25 | 1140 | 1265 | IPR000477 | Reverse transcriptase domain |
| Gene3D | G3DSA:3.10.10.10 | 8.3E-7 | 1144 | 1187 | No hit | No description |
| Gene3D | G3DSA:3.30.70.270 | 1.2E-9 | 1188 | 1267 | No hit | No description |
| CDD | cd09274 | 1.15E-58 | 1331 | 1446 | No hit | No description |
| PROSITE profile | PS50994 | 11.505 | 1409 | 1625 | IPR001584 | Integrase, catalytic core |
| Gene3D | G3DSA:3.30.420.10 | 3.0E-8 | 1459 | 1498 | IPR012337 | Ribonuclease H-like domain |
| Gene3D | G3DSA:3.30.420.10 | 3.0E-8 | 1547 | 1629 | IPR012337 | Ribonuclease H-like domain |
| SuperFamily | SSF53098 | 7.4E-8 | 1561 | 1629 | IPR012337 | Ribonuclease H-like domain |
| SuperFamily | SSF54160 | 6.68E-11 | 1702 | 1785 | IPR016197 | Chromo domain-like |
| PROSITE profile | PS50013 | 9.481 | 1742 | 1780 | IPR000953 | Chromo/chromo shadow domain |
| Gene3D | G3DSA:2.40.50.40 | 3.2E-7 | 1743 | 1784 | No hit | No description |
| Pfam | PF00385 | 6.6E-8 | 1743 | 1786 | IPR023780 | Chromo domain |
| CDD | cd00024 | 3.32E-4 | 1744 | 1780 | No hit | No description |
| SMART | SM00521 | 2.6E-5 | 1836 | 1893 | IPR001289 | Nuclear transcription factor Y subunit A |
| PROSITE profile | PS51152 | 14.417 | 1837 | 1872 | IPR001289 | Nuclear transcription factor Y subunit A |
| Pfam | PF02045 | 1.2E-6 | 1839 | 1872 | IPR001289 | Nuclear transcription factor Y subunit A |
| SMART | SM00521 | 2.9E-6 | 1941 | 1987 | IPR001289 | Nuclear transcription factor Y subunit A |
| PROSITE profile | PS51152 | 17.886 | 1942 | 1989 | IPR001289 | Nuclear transcription factor Y subunit A |
| Pfam | PF02045 | 5.4E-10 | 1944 | 1979 | IPR001289 | Nuclear transcription factor Y subunit A |
| PROSITE pattern | PS00686 | 0 | 1947 | 1967 | IPR018362 | CCAAT-binding factor, conserved site |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0015074 | Biological Process | DNA integration | ||||
| GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0008270 | Molecular Function | zinc ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1989 aa Download sequence Send to blast |
MLSQVVTNQV RQESEARQEG ADTSRVREFL RMNLPSFTES STTEDPENFV EELKKVSEDS 60 MSAHDYGLKF TQLSRYAPEM VKNMRSRNNL FVAGLGRASS KEGRDTMLIG HMDISRFMKS 120 KGHAPSSSSA PAPRNRGENN GQNSQNFKAR PAESQGCFKC GQKGHFMREC PKNKQGSGNS 180 GNRAQSSSVT PLDKAAPRGA TFGIGGGANR LYAITSRQEQ ENSPDVVTSV PIVKEFSEVF 240 PDDLPGVSPK REIDFGIDII LDTRPISITS YRMEPAQLKE LKEQLKDLLD KGFIRSNVSP 300 WGAPVLFVRK KDGSLRICID YRQLNKNGKV ITYASRQLKV HEKNYPTHEL ELDAVEFALK 360 IWRHYLYGVH VDIFTGHKSL QYVFTQKELN LRQRRWLELL KDYDISIIYH PGKANVVVDA 420 LSRSLRNEEA VQDKEPEVRK EPSKKRDKRK VREPSCNPSL GGRPAVEEEE GADNSQLDER 480 IVGVEVGLSA LNRRIVVVEN NFSSLESIEG LDEVKNNLVE LEDVQNEGLS TLELKLNEAI 540 SSLQREVEAL RRQVDEAAEV GVPTPVTVCE TRIEAPKPKD FRGERSAQDV ENFLWQMDAY 600 FEHVDMHNEA AKIRTATMYL TDKAMLWWRR KKADMERGVC QIDDWEQFKV ELKRQFYPQN 660 VVHEARRRLR ELKQTSSIRD YVKEFTKLTL QIPSLTSEDL LFYFLEGLQN WAKQELQRRQ 720 VSDVDEAIVV AESLNDLRTD AAKGRDNRSK TIPPKVDNNN RGRSRPNPNR GSDTRSNTRD 780 QPSNFRKNYE DRKRGAPHRE GCYICGETTH AARYCPSLRK LSAMVAAKKQ QEKAATQTRS 840 SAGEQRGQSS GSDKGKNVAV GMFNHMALIN HISTAALAAK PASVKPRESL FVDTKLNGKN 900 VRIMVDNGVT HNFVTEQKAK ELGLSYVASN TKLKTVNATP TTVHGISPKV PIDLGEWTGQ 960 TDFTIAPMYV FDVILGLDFW YEVNAFISPR HNQLHISDTG GSCVVPLIRV PQNGMQLSAM 1020 QLIKGFKRGE PIFLATLVGG AESCTEAVQL PHCIEKVLNS NKDVTPEELP QRLPPRREVD 1080 HQIELVPGAK PPAMTPYRMA PPELEELRKQ LKELLDAGHI RPSKAPFGAP VLFQKKKDGT 1140 LRLGQAKVFT KMDLRKGYHQ VRIAEGDEPK TACVTRYGAF DWLVMPFGLT NAPATFCTLM 1200 NKLFHSYLDQ FVVIYLDDIV VYSNNMEDHV EHLCKVFKVL RDNELYVKRE KCSFAQPTVQ 1260 FLGHSISHGE IRMDSNKVDA IKNWEAPTKV PELRSFLGLA NYYRRFIFNY SAIAAPLTDL 1320 LKKDHFSKAF EVHTDASDFA IGGVLMQEGH PIAYESRKLN EAERRYSAHE KEMTAVVHYL 1380 RTWRHYLLGA PFVVKTDNVA TTYFQSQKKL SAKQARWQDF LVEFNFTLEY KPGKANVVAD 1440 ALSRKASLAA VVSSSCSSIV GEIREGLQHD PVAKQLFALA QQGKTKKFWV DDGLLYTTAR 1500 RVYVPKWANL RRTLIKEGHD SAWAGNPGQK RTLALIEASY YWPRMRDDVE AYLVGVGVEL 1560 LDQLSPQTDG QTERINALLE CYLRLYVSAN QKDWAGLLDT AQFSYNLQRS EATGRSPFEL 1620 ATGQQPNTPQ SLPVNAGFKS PGAYQMAKAW EEQVDLARSY LDKAARKMKK FADRKRRPVD 1680 YQIGDRVMAG KISYRVDMPH HLKIHPVFHA SQLKPYFEDR EDKERGQAGR ARIFITPPTV 1740 DKQIEAIIDH QLVRGKGWNN SSSQFLVHWK GTAPEEATWE NTKTCGSFAT KSTSTCSCVA 1800 SGSSPIQARE RVPPRKAVRL QLMGIQQACV PLPSDVAEEP VFVNAKQYHG ILRLRQSCAK 1860 AESDNKLLKS RREEGFTNAM ISAQEIGLEM NVEPVFHPYY MSIFEPYDAQ PYPAQPYPVP 1920 LMVQLQLIRI QQAGVLLPVN VAEEPVFVNA KQYHGILRRR QSRAKAEPNT KLLKSRKIFC 1980 KMHFCHHFT |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ol8_A | 4e-71 | 311 | 1444 | 39 | 477 | Reverse transcriptase/ribonuclease H |
| 4ol8_B | 4e-71 | 311 | 1444 | 39 | 477 | Reverse transcriptase/ribonuclease H |
| 4ol8_E | 4e-71 | 311 | 1444 | 39 | 477 | Reverse transcriptase/ribonuclease H |
| 4ol8_F | 4e-71 | 311 | 1444 | 39 | 477 | Reverse transcriptase/ribonuclease H |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 1665 | 1677 | RKMKKFADRKRRP |
| 2 | 1672 | 1677 | DRKRRP |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_027769952.1 | 0.0 | LOW QUALITY PROTEIN: uncharacterized protein LOC114075973 | ||||
| TrEMBL | A0A1U8FPD1 | 0.0 | A0A1U8FPD1_CAPAN; uncharacterized protein LOC107857977 | ||||
| STRING | XP_009612101.1 | 0.0 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA1 | 2 | 7 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G30500.2 | 7e-22 | nuclear factor Y, subunit A7 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|