PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g008810.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 122aa    MW: 14493.4 Da    PI: 4.8107
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g008810.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.57.3e-111589890
                      -HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                B3  8 sdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                         +k+g l +p  f+ ++     + +  +  + ++  ++W  k+  ++++   + ++ W eFv++ +Lk+gD++vFk++g++ef
  Sopen02g008810.1 15 LPGFKNG-LKIPLGFL-KYlkR--HDQ-HEHAILTTCDKKWLGKV--NGRR---LEEGSWIEFVEELNLKVGDVLVFKHEGDMEF 89
                      4566666.*******9.77332..333.3566777899*******..7777...67899*******************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.85E-17397IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.8E-17397IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.01797IPR003340B3 DNA binding domain
CDDcd100171.16E-9895No hitNo description
SMARTSM010194.1E-91097IPR003340B3 DNA binding domain
PfamPF023622.7E-71889IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MEIPPKKPHF FKPILPGFKN GLKIPLGFLK YLKRHDQHEH AILTTCDKKW LGKVNGRRLE  60
EGSWIEFVEE LNLKVGDVLV FKHEGDMEFD VFKFDSSHHC DKEYAMYQEE DEDEDEEDED  120
KL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-169HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065118.12e-84B3 domain-containing protein REM5-like
TrEMBLA0A3Q7FIV98e-70A0A3Q7FIV9_SOLLC; Uncharacterized protein
STRINGSolyc02g055370.2.11e-70(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-13B3 family protein