PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g009780.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 345aa    MW: 38878.9 Da    PI: 9.1227
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g009780.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.29.2e-1816103272
          trihelix   2 WtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                       Wt qe+++Liea++ ++er  +++                   + +W++v ++++++g+ rs++qC++kw+nl +++kk++e e++ +
  Sopen02g009780.1  16 WTIQETMVLIEAKKMDDERRMKRQggdignssssergninkPGELRWKWVEDYCWRHGCLRSQNQCNDKWDNLMRDFKKVREYERRVS 103
                       *************96666655543345555566666666558899**************************************99864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.632889IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.8E-41290IPR009057Homeodomain-like
PfamPF138377.2E-1215101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDSSSSMLRD YRKGNWTIQE TMVLIEAKKM DDERRMKRQG GDIGNSSSSE RGNINKPGEL  60
RWKWVEDYCW RHGCLRSQNQ CNDKWDNLMR DFKKVREYER RVSEKLLLAQ GNDDENIIKS  120
YWKIERIERK EKNLPTNMLP EIYEALVQVV DKRGQKVLVG SSFNPTTTSM SPTLQQLQIA  180
TLPLPLPPPP QLLPPPPPPL VQPPPPNIPH TQPLPTMCDS SDHDKSEHSD SPAKRRRKGE  240
GGGGGGGGEA SGTSGDHHNT HNLQEVGSAI FKSATIIAKT IKASEEGEDR RHKEMLKLHE  300
RRLQIEESKA EINRQGINGL VDSINRLANS ILSLASNNNQ PPPPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064290.10.0trihelix transcription factor ASR3-like
TrEMBLK4B5950.0K4B595_SOLLC; Uncharacterized protein
STRINGSolyc02g030460.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48212236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.14e-54Trihelix family protein