PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g010260.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18979.8 Da    PI: 6.636
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g010260.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF351.8e-11246145
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      k ie+++ r v+fskR+++++  A+   + ++a+va+++fs+ gk
  Sopen02g010260.1  2 KLIESERARAVSFSKRKKTLFEDAKKFATQTGADVALMLFSPGGK 46
                      569***************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.339154IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-9153IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-16176IPR002100Transcription factor, MADS-box
PfamPF003191.0E-15449IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MKLIESERAR AVSFSKRKKT LFEDAKKFAT QTGADVALML FSPGGKPYSC GSTSVEDIIE  60
NFLKMKVEDP RRHYAEGELK GFEELNDLHK ELQTCNEKEK KRVLMHKILH PGSEIPQDKH  120
MEEHKLALKL RVENIKKETL NSILKEHLKF DLNVAPDPED EEEY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064670.11e-117agamous-like MADS-box protein AGL29
TrEMBLM1DHK13e-92M1DHK1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000891595e-93(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.13e-14M-type_MADS family protein