PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g010270.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 131aa    MW: 15142.4 Da    PI: 5.7848
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g010270.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.71.1e-11246145
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      k ie+++ r v+fskR+++++  A+   + ++a+va+++fs+ gk
  Sopen02g010270.1  2 KLIESERARAVSFSKRKKTLFEDAKKFATQTGADVALMLFSPGGK 46
                      569***************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.07E-16177IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.339154IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-9153IPR002100Transcription factor, MADS-box
PfamPF003196.5E-16449IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MKLIESERAR AVSFSKRKKT LFEDAKKFAT QTGADVALML FSPGGKPYSC GSTSVEDIIE  60
NFLKMKVEEP RRHYVEGELK EIPQDKHMEE QKLALKLRVE NIKKETLNSI LKEHLKFDLN  120
VAPEPEDEEE Y
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-132HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769967.12e-91agamous-like MADS-box protein AGL62
TrEMBLM1DHK13e-62M1DHK1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000891596e-63(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.19e-14AGAMOUS-like 29