PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g012950.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 212aa    MW: 23786.6 Da    PI: 9.7248
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g012950.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.41.8e-09155177628
                       HHHCHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   6 rerrkqkNReAArrsRqRKkaei 28 
                       + +r++kNRe+A rsR+RK+++ 
  Sopen02g012950.1 155 KNKRMIKNRESAARSRARKQESF 177
                       689*****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.3E-6144176No hitNo description
SuperFamilySSF579591.45E-5155180No hitNo description
PfamPF001704.6E-7155194IPR004827Basic-leucine zipper domain
PROSITE patternPS000360157172IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MWSSSSEEHH HNHQNLATNS SKSSSSSSSY SYNHPINPIL SINSKTMEEV WKDINLSCSR  60
DAQNTSGMVL QDLLARPFAN DPSTAAVTTA YGSPVPPPPV TMLTLNSVPE FHFFSNLNPI  120
RQTQQKHISN GALASPDPGR KRHSESDSNN SRDLKNKRMI KNRESAARSR ARKQESFYIL  180
LIIYIKCSIL SNNNSYSKAT LHYPCNYLIF LT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065310.11e-125protein FD-like
TrEMBLA0A3Q7EYH31e-88A0A3Q7EYH3_SOLLC; Uncharacterized protein
STRINGSolyc02g061990.2.17e-96(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35722239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.16e-15basic region/leucine zipper motif 27