PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g013020.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 206aa    MW: 24008.2 Da    PI: 6.1424
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g013020.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM401.2e-12611410128
               NAM  10 tdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkgel 99 
                       +de+l+  yL + v+g ++ + + i++v++y k +P++L  +  +++++ y F++ +kk   gk  nr    + g W++ g +++v++k++++
  Sopen02g013020.1   6 EDEQLI-GYLINFVTGMPVGC-DEIRTVELYgKKKPSQLFDT--TTTDHHYVFTELKKK---GKYFNRgiDGRGGSWREYGANEDVVDKNRSV 91 
                       599999.9**********999.77****9993569****633..234577999988776...5667774345699****************** PP

               NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                       +g k+ + f   +    e+  W+m+ey l
  Sopen02g013020.1  92 IGFKRRFRFE--E----ENHMWIMKEYCL 114
                       *********7..2....3468******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.5471141IPR003441NAC domain
PfamPF023655.9E-76114IPR003441NAC domain
SuperFamilySSF1019414.84E-157141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MGTNIEDEQL IGYLINFVTG MPVGCDEIRT VELYGKKKPS QLFDTTTTDH HYVFTELKKK  60
GKYFNRGIDG RGGSWREYGA NEDVVDKNRS VIGFKRRFRF EEENHMWIMK EYCLFDSKLK  120
DLRLRGQIRH EGYVVCSIMR KDTCSSQCQE NQDLGLIQSD DLKESTMTAL KQDECSVRQE  180
VVDEETLCNA YTRPLLDSMF RNTPKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233985.11e-145NAC domain-containing protein 96-like
TrEMBLA0A3Q7F0A41e-144A0A3Q7F0A4_SOLLC; Uncharacterized protein
STRINGSolyc02g062060.1.11e-145(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-07NAC domain containing protein 2