PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g013030.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 342aa    MW: 38822.9 Da    PI: 5.5721
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g013030.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.84.8e-15711711128
               NAM  11 deelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkgelv 100
                       de l+ +yL + v+g ++e+ + i++vd+y   +P+ L   + +++++ + F++ +kk+++gk+ nr  +   g Wk   ++++v++kkg  +
  Sopen02g013030.1   7 DEGLL-KYLINFVTGMPVEC-NKIRRVDLYGNkKPSLLF-DT-TTTDHHHVFTQLKKKKRNGKNFNRgiIGGGGSWKGVNNSRPVYNKKGLMI 95 
                       55566.9************9.78******9763788885.33.3456889*****************83345899****************** PP

               NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                       g kkt+ f   ++    +  W+m+eyrl
  Sopen02g013030.1  96 GFKKTFRFD--EN----NHVWFMKEYRL 117
                       ********7..22....458******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.5631144IPR003441NAC domain
SuperFamilySSF1019412.88E-186144IPR003441NAC domain
PfamPF023652.2E-67117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGMNFDDEGL LKYLINFVTG MPVECNKIRR VDLYGNKKPS LLFDTTTTDH HHVFTQLKKK  60
KRNGKNFNRG IIGGGGSWKG VNNSRPVYNK KGLMIGFKKT FRFDENNHVW FMKEYRLCDE  120
LLEDLRLHGK IRYEDFVLCS IRRKVNWDHF RQNLLASSSS QCQETVKSSA ANVIPSDHLN  180
STLNGNIRPV TLVFKESNVT QLPATIQEEC FVPVVHQETP SVSFGAIEED CSVPVVHPET  240
HSVSFAAIEE ECSVPVVHQE IPSGCFVAKE SNVSASKEVE ECSVPVETRL DNDIATYHKE  300
LDAYAASILE TMVPYIPEVQ EDEDDIPLFS EDFYIGHTNL WS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064738.10.0uncharacterized protein LOC107009957
TrEMBLK4B6970.0K4B697_SOLLC; Uncharacterized protein
STRINGSolyc02g062070.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041