PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g013400.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

SRS

Protein Properties

Length: 351aa MW: 38504.6 Da PI: 7.7016

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g013400.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	221.1	2.2e-68	122	274	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelkskkqsalsstkls 92 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++ + +++++k+kr+ + ++s+l st+l+ Sopen02g013400.1 122 GGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQQQQGHnnnNNNNNKHKRQREDPSASSLVSTRLP 214 5789**************************************************9988877663333333444444445556666777777 PP DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s++ + le+ ++P++v+++avf+c+++ss++d+e++laYq+avsigGhvfkGiLydqG e+ Sopen02g013400.1 215 SNT--NGLEVGKFPSKVRTSAVFQCIQMSSIEDDEDQLAYQAAVSIGGHVFKGILYDQGHES 274 665..5799999*********************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.5E-66	124	273	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.9E-27	126	168	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.4E-24	224	271	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MANFFSLGGN QEQQHQEISS SQAIVPTESN NWFLYRNEHH HHHHNQEIPN TYKGFELWQS 60 GNTPQHQQQQ QQHQFRHPIY PLQDLYSTDV GLGVGPSRSG FDISAGDHEA SRSGFVMMRS 120 GGGGISCQDC GNQAKKDCQH MRCRTCCKSR GFQCQTHVKS TWVPAAKRRE RQQQLAALQQ 180 QQQQGHNNNN NNNNKHKRQR EDPSASSLVS TRLPSNTNGL EVGKFPSKVR TSAVFQCIQM 240 SSIEDDEDQL AYQAAVSIGG HVFKGILYDQ GHESQYNNMV AAGGDTSSGG SAGGVQHHHH 300 NSAAVATATX XSGGDATAAG PSNFLDPSLF PAPLSTFMVA GTQFFPPSRS P

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MANFFSLGGN QEQQHQEISS SQAIVPTESN NWFLYRNEHH HHHHNQEIPN TYKGFELWQS  60
GNTPQHQQQQ QQHQFRHPIY PLQDLYSTDV GLGVGPSRSG FDISAGDHEA SRSGFVMMRS  120
GGGGISCQDC GNQAKKDCQH MRCRTCCKSR GFQCQTHVKS TWVPAAKRRE RQQQLAALQQ  180
QQQQGHNNNN NNNNKHKRQR EDPSASSLVS TRLPSNTNGL EVGKFPSKVR TSAVFQCIQM  240
SSIEDDEDQL AYQAAVSIGG HVFKGILYDQ GHESQYNNMV AAGGDTSSGG SAGGVQHHHH  300
NSAAVATATX XSGGDATAAG PSNFLDPSLF PAPLSTFMVA GTQFFPPSRS P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	194	199	KHKRQR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC331910	0.0	KC331910.1 Solanum lycopersicum expression of terpenoids 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015065203.1	0.0	protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	0.0	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	M1B9B5	0.0	M1B9B5_SOLTU; Uncharacterized protein
STRING	Solyc02g062400.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	3e-61	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]