PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g014010.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 206aa    MW: 24416.6 Da    PI: 5.9866
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g014010.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.7e-2049101456
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       ++++++eq++ Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Sopen02g014010.1  49 KRKLSDEQVNLLEQSFEHEHKLESERKDRLASELGLDPRQVAVWFQNRRARWK 101
                       45899***********************************************9 PP
2HD-ZIP_I/II119.71.6e-3848138292
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       +kr+ls+eqv+lLE+sFe+e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++   +++rLe+ev +L+e++ 
  Sopen02g014010.1  48 RKRKLSDEQVNLLEQSFEHEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKNEHETNIVDKCRLENEVLKLKEQMC 138
                       8**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.15143103IPR001356Homeobox domain
SMARTSM003892.3E-2046107IPR001356Homeobox domain
CDDcd000862.58E-1748104No hitNo description
PfamPF000462.5E-1749101IPR001356Homeobox domain
SuperFamilySSF466891.33E-1849112IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-2150110IPR009057Homeodomain-like
PRINTSPR000311.3E-57483IPR000047Helix-turn-helix motif
PROSITE patternPS00027078101IPR017970Homeobox, conserved site
PRINTSPR000311.3E-58399IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MNNDDQMLHI SQYYSGIYTQ QGEGKARRRR KKNKVDDVNG AMMMMMMRKR KLSDEQVNLL  60
EQSFEHEHKL ESERKDRLAS ELGLDPRQVA VWFQNRRARW KSKKLEEEYS KLKNEHETNI  120
VDKCRLENEV LKLKEQMCEA EKEIQRLLTE RSDGVSINSP TTSSLSMEAA MDPPFLGDFG  180
FDNSFYGPDH EELEWVNNLY NMPYHM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12950RKKNKVDDVNGAMMMMMMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065276.11e-154homeobox-leucine zipper protein ATHB-40-like
SwissprotQ9ZU702e-68ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLM0ZZL21e-125M0ZZL2_SOLTU; Uncharacterized protein
STRINGSolyc02g062960.2.11e-129(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.12e-56homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]