PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g014600.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SBP
Protein Properties Length: 203aa    MW: 22940.5 Da    PI: 9.9524
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g014600.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP491.7e-151011314878
                       SEEETTT--SS--S-STTTT-------S--- CS
               SBP  48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       rfh l+ fDe+krsCrrrLa+hn+rrrk+++
  Sopen02g014600.2 101 RFHVLEAFDEGKRSCRRRLAGHNKRRRKTHP 131
                       9***************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF476162.81E-11372IPR010987Glutathione S-transferase, C-terminal-like
Gene3DG3DSA:1.20.1050.109.7E-14374IPR010987Glutathione S-transferase, C-terminal-like
PROSITE profilePS5114111.19530129IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.1E-4100116IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.67E-12101134IPR004333Transcription factor, SBP-box
PfamPF031102.0E-8101128IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MKSKDSSDCT KQALFDELKA LEEHLKAHGP YVNGQNVCSV DMSLAPKMYH LEVALGHFKK  60
WSVTESLSHL DPFLLPVVQG SILVIHEQII QLKGYKVSLF RFHVLEAFDE GKRSCRRRLA  120
GHNKRRRKTH PENVANGASV NDEGGSNYLL ISLLRILANV QFNSSDQTKD QKFCLILQQK  180
SMRKKRKIEL LAKSPDGTTD GVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mye_A5e-26170110179Dehydroascorbate reductase family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123129KRRRKTH
2178186QKSMRKKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754412e-98HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3Q7G5S71e-73A0A3Q7G5S7_SOLLC; Uncharacterized protein
STRINGSolyc04g064470.1.12e-74(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1580933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.12e-29squamosa promoter-binding protein-like 12