PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g014730.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 162aa    MW: 17922.4 Da    PI: 9.8938
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g014730.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.1e-12556147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                      +++WT eE+  l+ +v+++G g W+tI +          R+  ++k++w+++
  Sopen02g014730.1  5 KQKWTSEEEAALKAGVAKYGVGKWSTILKDPEfavvlRSRSNVDLKDKWRNL 56
                      79************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.237161IPR017930Myb domain
SuperFamilySSF466895.31E-17259IPR009057Homeodomain-like
SMARTSM007173.4E-8459IPR001005SANT/Myb domain
PfamPF002498.8E-9556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-15556IPR009057Homeodomain-like
CDDcd116604.50E-21656No hitNo description
SuperFamilySSF467859.25E-5117151IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-6121154IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.2E-5124152IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGV AKYGVGKWST ILKDPEFAVV LRSRSNVDLK DKWRNLHVMA  60
SGWGSRHRGK IVSKSAQPTP KHDDSTLVSY VSENDTEIPD VKPLASTGDE LKDVGSKKPL  120
SRLDDLILES IAKLKESRGS SRNAISSYIE LREQIVVFLN GF
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0144550.0BT014455.1 Lycopersicon esculentum clone 133802R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066825.11e-106single myb histone 6-like
RefseqXP_015066826.11e-106single myb histone 6-like
RefseqXP_015066827.11e-106single myb histone 6-like
RefseqXP_027770361.11e-106single myb histone 6-like
SwissprotC0HIA33e-46SMH6_MAIZE; Single myb histone 6
TrEMBLA0A0V0IBG09e-95A0A0V0IBG0_SOLCH; Putative telomere repeat-binding factor 1-like
STRINGSolyc02g064630.2.11e-101(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-45telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]