PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g015540.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 145aa    MW: 16613.3 Da    PI: 3.7619
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g015540.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.44e-115643699
                      EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      + le ++g+ We+++  + ++g+++l+kGW++F++   + +  +++F+++ rs f  vv ++++
  Sopen02g015540.1  5 VFLEAPHGKAWEIEV--EISQGQIWLAKGWSDFCDYYSISVQSSLMFTYNPRSHF--VVAIYDQ 64
                      67999**********..********************************988888..9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.928165IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-12564IPR015300DNA-binding pseudobarrel domain
PfamPF023623.2E-8564IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-11565IPR015300DNA-binding pseudobarrel domain
CDDcd100171.75E-9563No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MFNPVFLEAP HGKAWEIEVE ISQGQIWLAK GWSDFCDYYS ISVQSSLMFT YNPRSHFVVA  60
IYDQSRTEIE YPIDQDIESD AEEKDILVAQ ANANVIEEDI LQSNANVDKE DIPILQSNAN  120
VIEDEEEDIP INCLQTNSNV IEQRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769991.11e-100B3 domain-containing transcription factor VRN1-like
TrEMBLA0A3Q7FGM03e-79A0A3Q7FGM0_SOLLC; Uncharacterized protein
STRINGSolyc03g043580.1.12e-82(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7499524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.12e-12B3 family protein