PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g015690.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TALE

Protein Properties

Length: 646aa MW: 71806.8 Da PI: 6.6024

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g015690.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.3	1.4e-09	475	512	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+++qV +WF N R + Sopen02g015690.1 475 FEHflHPYPSDADKHLLARQTGLSKNQVANWFINARVR 512 664559******************************88 PP
2	BELL	115.1	3.6e-37	333	403	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r ++q++k+kLls+++eVdkrY++y+eq+q+v++sF+ v+g g+a pYtslA +a+SrhF+cLkd +a q+ Sopen02g015690.1 333 RLDHQRRKVKLLSMIDEVDKRYNHYCEQMQMVVNSFDLVMGFGAAVPYTSLAHRAMSRHFKCLKDGVAAQL 403 6789****************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.1E-68	261	401	IPR006563	POX domain
Pfam	PF07526	2.3E-48	266	399	IPR006563	POX domain
PROSITE profile	PS50071	12.552	453	516	IPR001356	Homeobox domain
CDD	cd00086	2.34E-12	456	517	No hit	No description
SMART	SM00389	1.7E-9	456	520	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-17	457	523	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-28	459	522	IPR009057	Homeodomain-like
Pfam	PF05920	1.3E-17	473	512	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence Send to blast
MSQEYHHQGL ASNEFERPQD QHHHQQQHIG QQIQQEKLRV EQGFEPPGGE SSGIQVYETA 60 GMLSEMFNFQ TTSTAAVTAT ELLQDQLSHS NQQPHHQPWF GNRQETVVGG SLQVPFGDNT 120 KDDMNAKVLS NRDSVIAYYQ HQHNQVPSIS TTESMQLFLM NPQPNSPSQL STPSTLHQGF 180 SSPVGGHFSQ FMCGGASTSS NPIGGVNVLD QGQGLSLSLS STLQHLEASK VEDLRMSSGG 240 EMLFFNQESQ NHHNIGFGSS LGLVNVLRNS KYVKATQELL EEFCCVGKGQ LFKKINKVSR 300 NVTSPTINPS GSNNNNSSSS KDIIPPNLST ADRLDHQRRK VKLLSMIDEV DKRYNHYCEQ 360 MQMVVNSFDL VMGFGAAVPY TSLAHRAMSR HFKCLKDGVA AQLKKTCEAL GEKDGSNTTS 420 SGLTKGETPR LKLLEQNLRQ QRAFQQMGIR MEQEAWRPQR GLPERSVNIL RAWLFEHFLH 480 PYPSDADKHL LARQTGLSKN QVANWFINAR VRLWKPMVEE MYQREANEDD DMNSRNTQTP 540 TPDIIITTTN SNITETKSAA TASDKINASE NDPSMNTHYS SSVPTQLNNS PTIQDESDHI 600 LSHRSGAEYG TTDIGSKMMT FGTTTAGDVS LTLGLGNLPE NTHFNN

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence Send to blast

MSQEYHHQGL ASNEFERPQD QHHHQQQHIG QQIQQEKLRV EQGFEPPGGE SSGIQVYETA  60
GMLSEMFNFQ TTSTAAVTAT ELLQDQLSHS NQQPHHQPWF GNRQETVVGG SLQVPFGDNT  120
KDDMNAKVLS NRDSVIAYYQ HQHNQVPSIS TTESMQLFLM NPQPNSPSQL STPSTLHQGF  180
SSPVGGHFSQ FMCGGASTSS NPIGGVNVLD QGQGLSLSLS STLQHLEASK VEDLRMSSGG  240
EMLFFNQESQ NHHNIGFGSS LGLVNVLRNS KYVKATQELL EEFCCVGKGQ LFKKINKVSR  300
NVTSPTINPS GSNNNNSSSS KDIIPPNLST ADRLDHQRRK VKLLSMIDEV DKRYNHYCEQ  360
MQMVVNSFDL VMGFGAAVPY TSLAHRAMSR HFKCLKDGVA AQLKKTCEAL GEKDGSNTTS  420
SGLTKGETPR LKLLEQNLRQ QRAFQQMGIR MEQEAWRPQR GLPERSVNIL RAWLFEHFLH  480
PYPSDADKHL LARQTGLSKN QVANWFINAR VRLWKPMVEE MYQREANEDD DMNSRNTQTP  540
TPDIIITTTN SNITETKSAA TASDKINASE NDPSMNTHYS SSVPTQLNNS PTIQDESDHI  600
LSHRSGAEYG TTDIGSKMMT FGTTTAGDVS LTLGLGNLPE NTHFNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	462	520	5	63	Homeobox protein Meis2
3k2a_B	4e-16	462	520	5	63	Homeobox protein Meis2
4xrm_A	3e-16	462	520	5	63	Homeobox protein Meis2
4xrm_B	3e-16	462	520	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015064329.1	0.0	BEL1-like homeodomain protein 2
Swissprot	Q94KL5	1e-136	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	A0A3Q7EZM4	0.0	A0A3Q7EZM4_SOLLC; Uncharacterized protein
STRING	Solyc02g065490.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3341	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-134	BEL1-like homeodomain 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]