PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g015800.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 96aa MW: 10044.6 Da PI: 4.8571

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g015800.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	74.8	2.5e-23	1	58	24	81
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssss 81 ++a+caa +F+L++eLG+ +d++tieWLl++a+pai+++tgt++ +a+++++ s++ Sopen02g015800.1 1 MPALCAAHVFQLTKELGHRTDGETIEWLLRNAEPAIIAATGTCTLPATQVTTTSENIP 58 9*****************************************9999977633333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.8E-18	1	63	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	19.506	1	39	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
MPALCAAHVF QLTKELGHRT DGETIEWLLR NAEPAIIAAT GTCTLPATQV TTTSENIPLS 60 QSQPSVLAPL TRATPVSGFP AAPLIAEVVI VPAPYV

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	1e-132	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015064776.2	5e-51	transcription factor TCP11-like
Swissprot	Q9C518	7e-22	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A3Q7HYI7	8e-47	A0A3Q7HYI7_SOLLC; Uncharacterized protein
TrEMBL	G3BGV9	8e-47	G3BGV9_SOLLC; TCP transcription factor 19
STRING	Solyc09g008030.1.1	1e-47	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-24	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]