PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g016410.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 470aa MW: 51767.2 Da PI: 4.5925

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g016410.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.2	4.2e-39	116	175	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Sopen02g016410.1 116 PDKIIPCPRCNSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNS 175 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	113	173	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-31	118	174	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.574	120	174	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	122	158	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MTDPAIKLFG RTIQLPDIPD SSGAQGDDSL PGDNNGELEE EDEEAHKDDF GGNLDDDEEE 60 MEILTGKELQ DQNSEPTRTD SIKELPVDND CSIRPSKSEE EQGEASNSQE KILKKPDKII 120 PCPRCNSMET KFCYFNNYNV NQPRHFCKSC QRYWTAGGTM RNVPVGAGRR KNKNSIPHYR 180 QISVSETLSN TQTDYPNGIQ QPILAFGSPT PLCESMASVL YIADKTMHNC SQNGFHKPQE 240 PGVPVSYVVG DNGDDHSRRS SVTSANSEDE VNKTVPDLLK KNCHNFPPYM TYYPGAPWPY 300 PCSPVPWNSA VPPPGYCPPG FPMPFYPAAS YWGYTVAGSW NVPWMSPATV SLIQTPTTSG 360 PISPALGKHS RDENVQKPLS SMEEPSNESN PEKCLWVPKT LRIDDPGEAA KSSIWATLGI 420 KHDTVDSVGG SPFSAFQPKN DDNNRVSENS TVLQANPAAL SRSVNFNESL

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MTDPAIKLFG RTIQLPDIPD SSGAQGDDSL PGDNNGELEE EDEEAHKDDF GGNLDDDEEE  60
MEILTGKELQ DQNSEPTRTD SIKELPVDND CSIRPSKSEE EQGEASNSQE KILKKPDKII  120
PCPRCNSMET KFCYFNNYNV NQPRHFCKSC QRYWTAGGTM RNVPVGAGRR KNKNSIPHYR  180
QISVSETLSN TQTDYPNGIQ QPILAFGSPT PLCESMASVL YIADKTMHNC SQNGFHKPQE  240
PGVPVSYVVG DNGDDHSRRS SVTSANSEDE VNKTVPDLLK KNCHNFPPYM TYYPGAPWPY  300
PCSPVPWNSA VPPPGYCPPG FPMPFYPAAS YWGYTVAGSW NVPWMSPATV SLIQTPTTSG  360
PISPALGKHS RDENVQKPLS SMEEPSNESN PEKCLWVPKT LRIDDPGEAA KSSIWATLGI  420
KHDTVDSVGG SPFSAFQPKN DDNNRVSENS TVLQANPAAL SRSVNFNESL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015063968.1	0.0	cyclic dof factor 2
TrEMBL	A0A3Q7F0R9	0.0	A0A3Q7F0R9_SOLLC; Uncharacterized protein
STRING	Solyc02g067230.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-89	cycling DOF factor 2