PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g016520.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 94aa    MW: 10554.9 Da    PI: 9.3337
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g016520.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH216e-0725611854
                      HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                      +  ++L++llP+ + + +s K s + +L+++++YI++L
  Sopen02g016520.1 25 QLVSKLQQLLPEiR-NRRSNKASASKVLQETCNYIRNL 61
                      55689*******76.899999***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.734761IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-72376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.8E-82580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSGRRSRTQS SEGGTSRISD DQIIQLVSKL QQLLPEIRNR RSNKASASKV LQETCNYIRN  60
LHKEVDDLSD RLSQLLSTID ADSPEAAIIR SLIM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754418e-81HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233358.16e-61transcription factor PRE6 isoform X2
RefseqXP_015065156.16e-61transcription factor PRE6
SwissprotQ9LJX16e-40PRE5_ARATH; Transcription factor PRE5
TrEMBLM1A9E18e-57M1A9E1_SOLTU; Uncharacterized protein
STRINGSolyc02g067380.2.12e-60(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-33bHLH family protein