PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g018990.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 835aa    MW: 92035 Da    PI: 6.3797
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g018990.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.3e-18563357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le++++++++p+  +r +L +++    +++ +q+kvWFqNrR +ek+
  Sopen02g018990.2  5 KYVRYTPEQVEALERVYAECPKPTSLKRHQLIRECsilsNIDPKQIKVWFQNRRCREKQ 63
                      6789*****************************************************97 PP
2bZIP_122.13.3e-0757981859
                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59
                      rr+R++ ++e  +L++   +L+a Nk L +e+++l+k+v+ l
  Sopen02g018990.2 57 RRCREKQRKEASHLQTVNRKLTAMNKLLMEENDRLQKHVSHL 98
                      9*************************************9977 PP
3START167.78.2e-531553612203
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e++ ka  ++  Wv++  +++g+e++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W + ++  ++l+vi +g  g+++
  Sopen02g018990.2 155 IAEETLTEFLGKARGTAVDWVQMIGMKPGPESIGIVAVSRNCNGVAARACGLVSLEPM-KVAEILKDRPSWYRECRCLDILNVIPTGngGTIE 246
                       68999*****************************************************.8888888888************************ PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l++ +++a+++l+p Rdf+++Ry+ +l++g++vi+++S++s++  p      s+vRa++lpSg+li+p+++g+s +++v+h+dl++ +++++l
  Sopen02g018990.2 247 LIYLQTYAPTTLAPaRDFWTLRYTTSLEDGSLVICERSLTSNTGSPVgppATSSVRAKMLPSGFLIRPCEGGGSIIHIVDHIDLDACSVPEVL 339
                       *******************************************99998999****************************************** PP

                       HHHHHHHHHHHHHHHHHHTXXX CS
             START 182 rslvksglaegaktwvatlqrq 203
                       r+l++s+ + ++k+++a++++ 
  Sopen02g018990.2 340 RPLYESSKILAQKMTMAAFRYI 361
                       *****************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.451164IPR001356Homeobox domain
SMARTSM003891.5E-15268IPR001356Homeobox domain
CDDcd000869.11E-16565No hitNo description
SuperFamilySSF466895.99E-17569IPR009057Homeodomain-like
PfamPF000462.2E-15563IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.0E-18763IPR009057Homeodomain-like
CDDcd146861.09E-55793No hitNo description
PROSITE profilePS5084826.025145373IPR002913START domain
CDDcd088752.78E-69149365No hitNo description
Gene3DG3DSA:3.30.530.202.0E-19153344IPR023393START-like domain
SMARTSM002341.2E-48154364IPR002913START domain
SuperFamilySSF559611.65E-33155366No hitNo description
PfamPF018523.4E-50155362IPR002913START domain
PfamPF086701.9E-46689834IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MDSSKYVRYT PEQVEALERV YAECPKPTSL KRHQLIRECS ILSNIDPKQI KVWFQNRRCR  60
EKQRKEASHL QTVNRKLTAM NKLLMEENDR LQKHVSHLVY DNGFMRQQLH TQVNSTTTDT  120
CCDSVVVSGQ QQQQNPMPQH HPQRDADSPA GLLAIAEETL TEFLGKARGT AVDWVQMIGM  180
KPGPESIGIV AVSRNCNGVA ARACGLVSLE PMKVAEILKD RPSWYRECRC LDILNVIPTG  240
NGGTIELIYL QTYAPTTLAP ARDFWTLRYT TSLEDGSLVI CERSLTSNTG SPVGPPATSS  300
VRAKMLPSGF LIRPCEGGGS IIHIVDHIDL DACSVPEVLR PLYESSKILA QKMTMAAFRY  360
IRQIAQETSG EIQYAGGRQP AVLRAFSQRL CRGFNNAVSG FIDDGWTIMG SDGVDDVTIA  420
VNSSPSKFLD AQYNTLSILP TFGGVLCARA SMLLQDVCPA LLVRFLREHR SEWADYGVDA  480
YSSASLKASP YAVPCARPGV FPSSQVILPL AQTVEHEEFL EVVRLEGHAF SPEDIALSRD  540
MYLLQLCSGV EENATGACAQ LVFAHIDESF GDDAPLLPSG FSVIPLEPKS DSPSAARTLD  600
LASTLEARTG GTRPAGEVEG SSYNHRSVLT IAFQFAFENH YRENVAAMAR QYVRSIVGSV  660
QRVAMAIAPS RLCSQLTPKS FPGSPEAVTL ARWICRSYKN HTGGELLQMD SQAAGDAVLK  720
QLWHHTDSIM CCSVKMNDSA FFSFANQAGL DMLETTLIAL QDIMLDKILD EAGRKVLLSE  780
FPKIMQQGFA YLPAGLCVSS MGRPVSYEQA VAWKVLNDDN SNHCLAFMFT NWSFI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066839.10.0homeobox-leucine zipper protein ATHB-14 isoform X1
RefseqXP_015066840.10.0homeobox-leucine zipper protein ATHB-14 isoform X1
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLM1BWB10.0M1BWB1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000544210.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  3. Müller CJ, et al.
    PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 956-70
    [PMID:26637548]
  4. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  5. Kim ES, et al.
    HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.
    Physiol Plant, 2016. 157(2): p. 221-33
    [PMID:26968317]
  6. Husbands AY,Aggarwal V,Ha T,Timmermans MC
    In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes.
    Plant Cell, 2016. 28(8): p. 1783-94
    [PMID:27385814]
  7. Di Ruocco G, et al.
    Differential spatial distribution of miR165/6 determines variability in plant root anatomy.
    Development, 2018.
    [PMID:29158439]
  8. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  9. Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K
    Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(5): p. 1017-1026
    [PMID:29462472]