PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g019020.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YA

Protein Properties

Length: 210aa MW: 23249.8 Da PI: 7.8374

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g019020.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.6	9e-33	115	171	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VNaKQy++Il+RRq+Rak+e+ekkl k+rkpylheSRh hAl+R+Rg+gGrF Sopen02g019020.1 115 DEPVFVNAKQYHGILRRRQSRAKAESEKKL-LKARKPYLHESRHLHALKRARGCGGRF 171 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.1E-36	113	174	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.561	114	174	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.3E-27	116	171	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.2E-23	117	139	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	119	139	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.2E-23	148	171	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MTSSLHYHSD GSENEQSENQ SEAHSESSSP AAGMSVPGTV TTNMHYVMPN QLGNGNPMLQ 60 AQTAYPYPDP YYRSIFAPYD AQPYPPQPYP AQPMVHVQLM GIQQAGVPLP SDAIDEPVFV 120 NAKQYHGILR RRQSRAKAES EKKLLKARKP YLHESRHLHA LKRARGCGGR FLTAKETDNQ 180 QKQDESGDKS QVNINLESGK DKVASSENAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-23	114	184	1	71	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013370	0.0	BT013370.1 Lycopersicon esculentum clone 135390R, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015066626.1	1e-156	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_027770300.1	1e-156	nuclear transcription factor Y subunit A-7 isoform X1
Swissprot	Q84JP1	9e-66	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A1J6J5H3	1e-139	A0A1J6J5H3_NICAT; Nuclear transcription factor y subunit a-7
STRING	PGSC0003DMT400054416	1e-138	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6650	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	4e-50	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]