PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g019100.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 310aa MW: 35754 Da PI: 7.9562

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g019100.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.5	6.5e-50	27	153	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratk.sgyWkatgkdkev 92 pGfrFhPtdeelv +yL++k+e+k++ l e+ik++diyk++PwdLpk + +++ekewyfF+kr +ky+++ r+nr+t sg+Wkatg d+++ Sopen02g019100.1 27 LPGFRFHPTDEELVGFYLRRKIEKKTIGL-EIIKQIDIYKYDPWDLPKgSNNNGEKEWYFFCKRGRKYKNSLRPNRVTGgSGFWKATGIDRPI 118 69***********************99.89***********535666889****************77669******** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s +g+ +glkk+Lv+y+g+a kg+kt+W mhe+rl Sopen02g019100.1 119 YS-SGKCIGLKKSLVYYRGSAGKGTKTEWQMHEFRL 153 .999****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-53	26	184	IPR003441	NAC domain
PROSITE profile	PS51005	53.013	26	184	IPR003441	NAC domain
Pfam	PF02365	1.5E-24	28	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MEVEKISSIV TNNYYEDEDE DEDDVVLPGF RFHPTDEELV GFYLRRKIEK KTIGLEIIKQ 60 IDIYKYDPWD LPKGSNNNGE KEWYFFCKRG RKYKNSLRPN RVTGGSGFWK ATGIDRPIYS 120 SGKCIGLKKS LVYYRGSAGK GTKTEWQMHE FRLPVENDKS TKHLHANTIP QQDETWTLCR 180 ILKRNVSYKK PIPDWKEVAK KQRNNSVMNM DVLSSKICSN SRIESSPNSS QIYISFSTTS 240 VVKQNTYTNT ITENKHQFVS QQSSGTSSES TTVGAVTSNS STPLDFNEWL EHGNWDELQS 300 IFELSFDPLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-47	28	190	22	174	NAC domain-containing protein 19
3swm_B	2e-47	28	190	22	174	NAC domain-containing protein 19
3swm_C	2e-47	28	190	22	174	NAC domain-containing protein 19
3swm_D	2e-47	28	190	22	174	NAC domain-containing protein 19
3swp_A	2e-47	28	190	22	174	NAC domain-containing protein 19
3swp_B	2e-47	28	190	22	174	NAC domain-containing protein 19
3swp_C	2e-47	28	190	22	174	NAC domain-containing protein 19
3swp_D	2e-47	28	190	22	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015065546.1	0.0	transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	3e-81	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	M1BW99	0.0	M1BW99_SOLTU; Uncharacterized protein
STRING	Solyc02g069960.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1697	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	1e-80	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]