PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g019960.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 246aa    MW: 27889 Da    PI: 5.4276
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g019960.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.4e-05186230454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       + n  Er+RR ++++    ++ ++P a      +++ +++L +Av+Y+ksL
  Sopen02g019960.1 186 TSNCSERKRR-KLKKMVKAIKGIVPGA-----SRMNTVTVLDEAVRYLKSL 230
                       6799999998.7**************9.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.252181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-8184239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-8186240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-6188236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-6191235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MQNNYQFSPQ IQKPFVSLED QAAGGNIFDI PVPSVFDTMA LPTGFQSSVP FHGFKFQSSE  60
ACPKNFIIFD QTDYRSQIMY HPAMASKFPY PDLNYNSTRF QDGMERKIAN NENTEVSSYM  120
KEDSDDINAL LSLEEEEHEE YDEEEVSTAR TDANYGCSSP ESYSNYHCQS KKSRTSSFRE  180
SSGSSTSNCS ERKRRKLKKM VKAIKGIVPG ASRMNTVTVL DEAVRYLKSL KVEVQKLGVD  240
NLKTYA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066957.10.0transcription factor bHLH144
TrEMBLA0A2G2XEA81e-150A0A2G2XEA8_CAPBA; Uncharacterized protein
TrEMBLA0A3Q7F2671e-151A0A3Q7F267_SOLLC; Uncharacterized protein
STRINGSolyc02g070880.1.11e-152(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81241924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.22e-30bHLH family protein